^DATABASE = GeoMiame
!Database_name = Gene Expression Omnibus (GEO)
!Database_institute = NCBI NLM NIH
!Database_web_link = http://www.ncbi.nlm.nih.gov/geo
!Database_email = geo@ncbi.nlm.nih.gov
^SERIES = GSE115978
!Series_title = Single-cell RNA-seq of melanoma ecosystems reveals sources of T cells exclusion linked to immunotherapy clinical outcomes
!Series_geo_accession = GSE115978
!Series_status = Public on Nov 01 2018
!Series_submission_date = Jun 18 2018
!Series_last_update_date = Mar 26 2019
!Series_pubmed_id = 30388455
!Series_summary = Immune checkpoint inhibitors (ICI) produce durable responses in some melanoma patients, but many patients derive no clinical benefit, and the molecular underpinnings of such resistance remain elusive. Here, we leveraged single-cell RNA-seq (scRNA-seq) from 31 melanoma tumors and novel computational methods to interrogate malignant cell states that promote immune evasion. We identified a resistance program expressed by malignant cells that is associated with T cell exclusion and immune evasion. The program is present prior to immunotherapy, characterizes cold niches, and predicts clinical responses to anti-PD-1 therapy in an independent cohort of 112 melanoma patients. CDK4/6-inhibition represses this program in individual malignant cells, induces senescence, and reduces melanoma tumor outgrowth in a mouse model when given in combination with immunotherapy. Our study provides a high-resolution landscape of ICI resistant cell states, identifies clinically predictive signatures, and forms a basis for the development of novel therapeutic strategies that could overcome immunotherapy resistance. 
!Series_overall_design = Individual cells were dissociated from fresh tumor resections, isolated immune and non-immune cells by FACS based on CD45 staining, and profiled with a modified full length SMART-Seq2 protocol. 
!Series_overall_design = 
!Series_overall_design = ** Submitter declares that the raw reads will be made available through dbGaP. **
!Series_type = Expression profiling by high throughput sequencing
!Series_contributor = Livnat,,Jerby-Arnon
!Series_contributor = Parin,,Shah
!Series_contributor = Michael,S,Cuoco
!Series_contributor = Christopher,,Rodman
!Series_contributor = Mei,J,Su
!Series_contributor = Johannes,C,Melms
!Series_contributor = Rachel,,Leeson
!Series_contributor = Abhay,,Kanodia
!Series_contributor = Shaolin,,Mei
!Series_contributor = Jia,R,Lin
!Series_contributor = Shu,,Wang
!Series_contributor = Bokang,,Rabasha
!Series_contributor = David,,Liu
!Series_contributor = Gao,,Zhang
!Series_contributor = Claire,,Margolais
!Series_contributor = Orr,,Ashenberg
!Series_contributor = Patrick,A,Ott
!Series_contributor = Elizabeth,I,Buchbinder
!Series_contributor = Riz,,Haq
!Series_contributor = F,S,Hodi
!Series_contributor = G,M,Boland
!Series_contributor = Ryan,J,Sullivan
!Series_contributor = Dennie,T,Frederick
!Series_contributor = Benchun,,Miao
!Series_contributor = Tabea,,Moll
!Series_contributor = Keith,T,Flaherty
!Series_contributor = Meenhard,,Herlyn
!Series_contributor = Russell,W,Jenkins
!Series_contributor = Rohit,,Thummalapalli
!Series_contributor = Monika,S,Kowalczyk
!Series_contributor = Israel,,Cañadas
!Series_contributor = Bastian,,Schilling
!Series_contributor = Adam,N,Cartwright
!Series_contributor = Adrienne,M,Luoma
!Series_contributor = Shruti,,Malu
!Series_contributor = Patrick,,Hwu
!Series_contributor = Chantale,,Bernatchez
!Series_contributor = Marie,A,Forget
!Series_contributor = David,A,Barbie
!Series_contributor = Alex,K,Shalek
!Series_contributor = Itay,,Tirosh
!Series_contributor = Peter,K,Sorger
!Series_contributor = Kai,,Wucherpfennig
!Series_contributor = Eliezer,M,Van Allen
!Series_contributor = Dirk,,Schadendorf
!Series_contributor = Bruce,E,Johnson
!Series_contributor = Asaf,,Rotem
!Series_contributor = Orit,,Rozenblatt-Rosen
!Series_contributor = Levi,A,Garraway
!Series_contributor = Charles,H,Yoon
!Series_contributor = Benjamin,,Izar
!Series_contributor = Aviv,,Regev
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!Sample_geo_accession = GSM3197119
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445763
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197120
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_G01_S73_comb
!Sample_geo_accession = GSM3197120
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445762
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197121
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_D09_S141_comb
!Sample_geo_accession = GSM3197121
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445761
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197122
!Sample_title = CY88_3_D02_S614_comb
!Sample_geo_accession = GSM3197122
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445760
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197123
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_D06_S138_comb
!Sample_geo_accession = GSM3197123
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445759
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197124
!Sample_title = cy53_1_CD45_neg_C06_S318_comb
!Sample_geo_accession = GSM3197124
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445758
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197125
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_C04_S28_comb
!Sample_geo_accession = GSM3197125
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445757
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197126
!Sample_title = Cy71_CD45_D08_S524_comb
!Sample_geo_accession = GSM3197126
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445756
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197127
!Sample_title = Cy81_FNA_CD45_B01_S301_comb
!Sample_geo_accession = GSM3197127
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445755
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197128
!Sample_title = CY88_5_B06_S690_comb
!Sample_geo_accession = GSM3197128
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445754
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197129
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_E04_S244_comb
!Sample_geo_accession = GSM3197129
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445753
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197130
!Sample_title = Cy80_II_CD45_B07_S883_comb
!Sample_geo_accession = GSM3197130
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445752
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197131
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_H11_S1151_comb
!Sample_geo_accession = GSM3197131
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445751
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197132
!Sample_title = Cy81_Bulk_CD45_B10_S118_comb
!Sample_geo_accession = GSM3197132
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445750
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197133
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_F10_S838_comb
!Sample_geo_accession = GSM3197133
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445749
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197134
!Sample_title = CY88_3_F01_S637_comb
!Sample_geo_accession = GSM3197134
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445748
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197135
!Sample_title = CY88_3_C01_S601_comb
!Sample_geo_accession = GSM3197135
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445747
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197136
!Sample_title = CY89NEG_E07_S55_comb
!Sample_geo_accession = GSM3197136
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445746
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^SAMPLE = GSM3197137
!Sample_title = CY89CORE11_G02_S170_comb
!Sample_geo_accession = GSM3197137
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy78_CD45_neg_1_D07_S523_comb
!Sample_geo_accession = GSM3197138
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy78_CD45_neg_3_D01_S709_comb
!Sample_geo_accession = GSM3197139
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197142
!Sample_title = Cy80_II_CD45_C09_S897_comb
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3197143
!Sample_title = cy81_FNA_CD45_neg_D04_S1000_comb
!Sample_geo_accession = GSM3197143
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197144
!Sample_title = cy82_CD45_pos_2_H12_S576_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3197145
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3197146
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD45_neg_G01_S937_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197152
!Sample_title = CY89CORE11_A11_S107_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197153
!Sample_title = cy78_CD45_neg_3_B02_S686_comb
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445670
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197154
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_A02_S770_comb
!Sample_geo_accession = GSM3197154
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445669
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197155
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_D01_S1093_comb
!Sample_geo_accession = GSM3197155
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445668
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197156
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_C01_S313_comb
!Sample_geo_accession = GSM3197156
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445667
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197157
!Sample_title = cy81_Bulk_CD45_neg_A10_S106_comb
!Sample_geo_accession = GSM3197157
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197158
!Sample_title = cy53_1_CD45_neg_E04_S340_comb
!Sample_geo_accession = GSM3197158
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197159
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_C03_S795_comb
!Sample_geo_accession = GSM3197159
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445664
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197160
!Sample_title = cy78_CD45_neg_3_D04_S712_comb
!Sample_geo_accession = GSM3197160
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445663
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^SAMPLE = GSM3197161
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_A10_S10_comb
!Sample_geo_accession = GSM3197161
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445662
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197162
!Sample_title = cy81_FNA_CD45_neg_B01_S973_comb
!Sample_geo_accession = GSM3197162
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_title = Cy81_FNA_CD45_E05_S341_comb
!Sample_geo_accession = GSM3197163
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy78_CD45_neg_3_E02_S722_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197169
!Sample_title = cy78_CD45_neg_1_G05_S557_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197170
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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^SAMPLE = GSM3197171
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_B02_S686_comb
!Sample_geo_accession = GSM3197171
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = Cy81_Bulk_CD45_E10_S154_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = CY88CD45_150813_G04_S364_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = cy82_CD45_pos_3_A03_S3_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197179
!Sample_title = cy78_CD45_neg_3_G11_S755_comb
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445644
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197180
!Sample_title = Cy81_FNA_CD45_D09_S333_comb
!Sample_geo_accession = GSM3197180
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445643
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy79_p3_CD45_neg_PDL1_neg_A08_S200_comb
!Sample_geo_accession = GSM3197181
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445642
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197182
!Sample_title = Cy71_CD45_E12_S540_comb
!Sample_geo_accession = GSM3197182
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445641
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197183
!Sample_title = cy94_cd45neg_cd90pos_G07_S367_comb
!Sample_geo_accession = GSM3197183
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197184
!Sample_title = cy78_CD45_neg_1_H01_S565_comb
!Sample_geo_accession = GSM3197184
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197185
!Sample_title = CY89CORE11_F05_S161_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445708
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^SAMPLE = GSM3197186
!Sample_title = CY89NEG_C03_S27_comb
!Sample_geo_accession = GSM3197186
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197187
!Sample_title = cy81_Bulk_CD45_neg_G01_S169_comb
!Sample_geo_accession = GSM3197187
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445706
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3197188
!Sample_title = CY89CORE11_B10_S118_comb
!Sample_geo_accession = GSM3197188
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445705
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!Sample_title = cy78_CD45_neg_1_C02_S506_comb
!Sample_geo_accession = GSM3197189
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197192
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197194
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3197195
!Sample_title = cy78_CD45_neg_1_A05_S485_comb
!Sample_geo_accession = GSM3197195
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy81_Bulk_CD45_neg_C03_S123_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445697
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197197
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_C03_S1083_comb
!Sample_geo_accession = GSM3197197
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445696
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197198
!Sample_title = cy94_cd45neg_cd90pos_E08_S344_comb
!Sample_geo_accession = GSM3197198
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197199
!Sample_title = cy81_FNA_CD45_neg_C09_S993_comb
!Sample_geo_accession = GSM3197199
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197200
!Sample_title = cy80_CD45_neg_G04_S940_comb
!Sample_geo_accession = GSM3197200
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = Cy80_II_CD45_H09_S957_comb
!Sample_geo_accession = GSM3197201
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197202
!Sample_title = cy80_CD45_neg_A09_S873_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197203
!Sample_title = CY88_3_H11_S671_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197204
!Sample_title = Cy80_II_CD45_B11_S887_comb
!Sample_geo_accession = GSM3197204
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445689
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197205
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_D12_S144_comb
!Sample_geo_accession = GSM3197205
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445943
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197206
!Sample_title = CY89NEG_B03_S15_comb
!Sample_geo_accession = GSM3197206
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445942
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197207
!Sample_title = Cy81_Bulk_CD45_E04_S148_comb
!Sample_geo_accession = GSM3197207
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445941
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197208
!Sample_title = Cy80_II_CD45_D11_S911_comb
!Sample_geo_accession = GSM3197208
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445940
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197209
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_D05_S137_comb
!Sample_geo_accession = GSM3197209
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445939
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197210
!Sample_title = cy78_CD45_neg_1_E03_S531_comb
!Sample_geo_accession = GSM3197210
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3197211
!Sample_title = CY88_3_C10_S610_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445937
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197212
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_B08_S308_comb
!Sample_geo_accession = GSM3197212
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445936
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^SAMPLE = GSM3197213
!Sample_title = cy78_CD45_neg_1_E07_S535_comb
!Sample_geo_accession = GSM3197213
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445935
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3197214
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_B12_S24_comb
!Sample_geo_accession = GSM3197214
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446007
!Sample_supplementary_file_1 = NONE
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!Sample_title = CY89NEG_G01_S73_comb
!Sample_geo_accession = GSM3197215
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_B02_S14_comb
!Sample_geo_accession = GSM3197216
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p4_CD45_neg_PDL1_pos_G08_S464_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy81_FNA_CD45_neg_F09_S1029_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197219
!Sample_title = cy78_CD45_neg_2_C06_S606_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197220
!Sample_title = Cy81_FNA_CD45_G10_S370_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446001
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^SAMPLE = GSM3197221
!Sample_title = Cy71_CD45_E11_S539_comb
!Sample_geo_accession = GSM3197221
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446000
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^SAMPLE = GSM3197222
!Sample_title = CY88_5_D11_S719_comb
!Sample_geo_accession = GSM3197222
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445999
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197223
!Sample_title = cy82_CD45_pos_2_D11_S527_comb
!Sample_geo_accession = GSM3197223
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445998
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^SAMPLE = GSM3197224
!Sample_title = CY89FNAQ2_F06_S450_comb
!Sample_geo_accession = GSM3197224
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy78_CD45_neg_3_G02_S746_comb
!Sample_geo_accession = GSM3197226
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197228
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197229
!Sample_title = cy78_CD45_neg_1_B02_S494_comb
!Sample_geo_accession = GSM3197229
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_geo_accession = GSM3197230
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445991
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197231
!Sample_title = cy80_CD45_neg_D04_S904_comb
!Sample_geo_accession = GSM3197231
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445990
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197232
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_F01_S157_comb
!Sample_geo_accession = GSM3197232
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445989
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197233
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_A02_S386_comb
!Sample_geo_accession = GSM3197233
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445988
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197234
!Sample_title = cy80_CD45_neg_E02_S914_comb
!Sample_geo_accession = GSM3197234
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_D09_S45_comb
!Sample_geo_accession = GSM3197235
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3197236
!Sample_title = cy78_CD45_neg_1_H07_S571_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197237
!Sample_title = Cy80_II_CD45_G07_S943_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445911
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197238
!Sample_title = cy78_CD45_neg_1_F06_S546_comb
!Sample_geo_accession = GSM3197238
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: post.treatment
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445910
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^SAMPLE = GSM3197239
!Sample_title = cy81_FNA_CD45_neg_E04_S1012_comb
!Sample_geo_accession = GSM3197239
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445909
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197240
!Sample_title = cy81_Bulk_CD45_neg_E04_S148_comb
!Sample_geo_accession = GSM3197240
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445908
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197241
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_H01_S181_comb
!Sample_geo_accession = GSM3197241
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445907
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197242
!Sample_title = cy81_Bulk_CD45_neg_C11_S131_comb
!Sample_geo_accession = GSM3197242
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445906
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_A04_S4_comb
!Sample_geo_accession = GSM3197243
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445905
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197244
!Sample_title = cy81_Bulk_CD45_neg_D09_S141_comb
!Sample_geo_accession = GSM3197244
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445904
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197245
!Sample_title = Cy71_CD45_G08_S560_comb
!Sample_geo_accession = GSM3197245
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445903
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197246
!Sample_title = CY89CORE11_A04_S100_comb
!Sample_geo_accession = GSM3197246
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445902
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197247
!Sample_title = cy80_CD45_neg_G02_S938_comb
!Sample_geo_accession = GSM3197247
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445901
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197248
!Sample_title = CY88_5_H03_S759_comb
!Sample_geo_accession = GSM3197248
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
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!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445900
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197249
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_B08_S20_comb
!Sample_geo_accession = GSM3197249
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445899
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197250
!Sample_title = CY88_5_E04_S724_comb
!Sample_geo_accession = GSM3197250
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445898
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197251
!Sample_title = CY89NEG_H11_S95_comb
!Sample_geo_accession = GSM3197251
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445897
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197252
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_D11_S335_comb
!Sample_geo_accession = GSM3197252
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445986
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197253
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_E02_S818_comb
!Sample_geo_accession = GSM3197253
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445985
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197254
!Sample_title = cy82_CD45_pos_3_B11_S23_comb
!Sample_geo_accession = GSM3197254
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445984
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197255
!Sample_title = cy81_FNA_CD45_neg_F08_S1028_comb
!Sample_geo_accession = GSM3197255
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445983
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197256
!Sample_title = CY88_3_D07_S619_comb
!Sample_geo_accession = GSM3197256
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445982
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197257
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_F09_S261_comb
!Sample_geo_accession = GSM3197257
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445981
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197258
!Sample_title = CY88_3_G09_S657_comb
!Sample_geo_accession = GSM3197258
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy79_p5_CD45_neg_PDL1_neg_D03_S807_comb
!Sample_geo_accession = GSM3197259
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3197263
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197264
!Sample_title = CY88_3_B04_S592_comb
!Sample_geo_accession = GSM3197264
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197265
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_A11_S683_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445964
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197275
!Sample_title = Cy81_Bulk_CD45_D10_S142_comb
!Sample_geo_accession = GSM3197275
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445963
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197276
!Sample_title = CY89NEG_F07_S67_comb
!Sample_geo_accession = GSM3197276
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445962
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197277
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_H06_S762_comb
!Sample_geo_accession = GSM3197277
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445961
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^SAMPLE = GSM3197278
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!Sample_geo_accession = GSM3197278
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197279
!Sample_title = cy82_CD45_pos_2_B03_S495_comb
!Sample_geo_accession = GSM3197279
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197280
!Sample_title = cy78_CD45_neg_1_A04_S484_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445958
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^SAMPLE = GSM3197281
!Sample_title = Cy81_FNA_CD45_C05_S317_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197282
!Sample_title = Cy80_II_CD45_B01_S877_comb
!Sample_geo_accession = GSM3197282
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445956
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197283
!Sample_title = CY89CORE11_E10_S154_comb
!Sample_geo_accession = GSM3197283
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197284
!Sample_title = cy81_Bulk_CD45_neg_E02_S146_comb
!Sample_geo_accession = GSM3197284
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD45_neg_A05_S869_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3197289
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197290
!Sample_title = CY88_3_A10_S586_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197292
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD45_neg_F05_S929_comb
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445850
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197301
!Sample_title = cy78_CD45_neg_1_H08_S572_comb
!Sample_geo_accession = GSM3197301
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197302
!Sample_title = CY89CORE11_B04_S112_comb
!Sample_geo_accession = GSM3197302
!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3197303
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197306
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197307
!Sample_title = CY89CORE11_B06_S114_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197308
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197309
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_C07_S223_comb
!Sample_geo_accession = GSM3197309
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445841
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197310
!Sample_title = cy78_CD45_neg_3_G07_S751_comb
!Sample_geo_accession = GSM3197310
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445840
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197311
!Sample_title = CY89NEG_A06_S6_comb
!Sample_geo_accession = GSM3197311
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445839
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy79_p4_CD45_neg_PDL1_neg_B04_S1072_comb
!Sample_geo_accession = GSM3197312
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445838
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197313
!Sample_title = Cy81_FNA_CD45_F02_S350_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197314
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_H01_S1141_comb
!Sample_geo_accession = GSM3197314
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445836
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197315
!Sample_title = CY89CORE11_D09_S141_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445835
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197316
!Sample_title = cy78_CD45_neg_1_F10_S550_comb
!Sample_geo_accession = GSM3197316
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445834
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197317
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_H11_S479_comb
!Sample_geo_accession = GSM3197317
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_title = cy81_FNA_CD45_neg_H09_S1053_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy78_CD45_neg_3_E05_S725_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy78_CD45_neg_1_H04_S568_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197325
!Sample_title = CY88_5_B12_S696_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197326
!Sample_title = CY88_3_H10_S670_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445826
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197327
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_B11_S119_comb
!Sample_geo_accession = GSM3197327
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445815
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^SAMPLE = GSM3197328
!Sample_title = CY89FNAQ2_C04_S412_comb
!Sample_geo_accession = GSM3197328
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3197329
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_E10_S730_comb
!Sample_geo_accession = GSM3197329
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_title = Cy80_II_CD45_B09_S885_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197331
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197333
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_E05_S245_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197334
!Sample_title = CY88_5_H05_S761_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445806
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197335
!Sample_title = Cy81_FNA_CD45_H12_S384_comb
!Sample_geo_accession = GSM3197335
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445805
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197337
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197342
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_D05_S425_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197345
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_D01_S421_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197346
!Sample_title = CY88_5_D10_S718_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197347
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197352
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445858
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197353
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_F11_S167_comb
!Sample_geo_accession = GSM3197353
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197354
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197355
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_C04_S412_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197357
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3197358
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197360
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197361
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!Sample_geo_accession = GSM3197361
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445892
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197362
!Sample_title = CY88_3_C12_S612_comb
!Sample_geo_accession = GSM3197362
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445891
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197363
!Sample_title = Cy80_II_CD45_D09_S909_comb
!Sample_geo_accession = GSM3197363
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445890
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197364
!Sample_title = cy81_FNA_CD45_neg_E12_S1020_comb
!Sample_geo_accession = GSM3197364
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445889
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197365
!Sample_title = cy78_CD45_neg_3_G09_S753_comb
!Sample_geo_accession = GSM3197365
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197366
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_A12_S1068_comb
!Sample_geo_accession = GSM3197366
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445887
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197367
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_B11_S1079_comb
!Sample_geo_accession = GSM3197367
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445886
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197368
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_A05_S773_comb
!Sample_geo_accession = GSM3197368
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445885
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197369
!Sample_title = Cy71_CD45_D11_S527_comb
!Sample_geo_accession = GSM3197369
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445884
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197370
!Sample_title = cy80_CD45_neg_D03_S903_comb
!Sample_geo_accession = GSM3197370
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445883
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197371
!Sample_title = cy78_CD45_neg_1_B08_S500_comb
!Sample_geo_accession = GSM3197371
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445882
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197372
!Sample_title = cy88_cd45pos_5_C01_S217_comb
!Sample_geo_accession = GSM3197372
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445881
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197373
!Sample_title = cy81_Bulk_CD45_neg_E09_S153_comb
!Sample_geo_accession = GSM3197373
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445880
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197374
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_B06_S210_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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^SAMPLE = GSM3197375
!Sample_title = cy78_CD45_neg_3_D07_S715_comb
!Sample_geo_accession = GSM3197375
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445878
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197376
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_F05_S833_comb
!Sample_geo_accession = GSM3197376
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445877
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3197377
!Sample_title = cy80_CD45_neg_B01_S877_comb
!Sample_geo_accession = GSM3197377
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445876
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197378
!Sample_title = cy82_CD45_pos_1_E08_S536_comb
!Sample_geo_accession = GSM3197378
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel82
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445875
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197379
!Sample_title = Cy81_Bulk_CD45_B09_S117_comb
!Sample_geo_accession = GSM3197379
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445874
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197380
!Sample_title = cy78_CD45_neg_1_A03_S483_comb
!Sample_geo_accession = GSM3197380
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445873
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!Sample_title = cy79_p5_CD45_neg_PDL1_neg_H06_S858_comb
!Sample_geo_accession = GSM3197381
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197382
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_A03_S1059_comb
!Sample_geo_accession = GSM3197382
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197383
!Sample_title = cy78_CD45_neg_1_F08_S548_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445865
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197384
!Sample_title = cy60_1_cd_45_neg_3_C10_S514_comb
!Sample_geo_accession = GSM3197384
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445864
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197385
!Sample_title = CY88_3_C08_S608_comb
!Sample_geo_accession = GSM3197385
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445870
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197386
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_A12_S108_comb
!Sample_geo_accession = GSM3197386
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_geo_accession = GSM3197387
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445933
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197396
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_C08_S128_comb
!Sample_geo_accession = GSM3197396
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445932
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197397
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_E08_S728_comb
!Sample_geo_accession = GSM3197397
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445931
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197398
!Sample_title = cy80_CD45_neg_D07_S907_comb
!Sample_geo_accession = GSM3197398
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445930
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197399
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_F03_S63_comb
!Sample_geo_accession = GSM3197399
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445929
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197400
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_H07_S859_comb
!Sample_geo_accession = GSM3197400
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197401
!Sample_title = cy79_p5_CD45_pos_PD1_pos_E02_S626_comb
!Sample_geo_accession = GSM3197401
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445927
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197402
!Sample_title = cy80_CD45_neg_A03_S867_comb
!Sample_geo_accession = GSM3197402
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445926
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197403
!Sample_title = Cy81_FNA_CD45_B10_S310_comb
!Sample_geo_accession = GSM3197403
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445925
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197404
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_H07_S187_comb
!Sample_geo_accession = GSM3197404
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p5_CD45_neg_PDL1_neg_C09_S801_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197410
!Sample_title = cy53_1_CD45_neg_E12_S348_comb
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197411
!Sample_title = cy80_CD45_neg_H02_S950_comb
!Sample_geo_accession = GSM3197411
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197412
!Sample_title = cy78_CD45_neg_2_C05_S605_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445916
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197413
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_G04_S172_comb
!Sample_geo_accession = GSM3197413
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445915
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197414
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_G03_S843_comb
!Sample_geo_accession = GSM3197414
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445914
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197415
!Sample_title = cy78_CD45_neg_1_G04_S556_comb
!Sample_geo_accession = GSM3197415
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445731
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197416
!Sample_title = cy53_1_CD45_neg_H12_S384_comb
!Sample_geo_accession = GSM3197416
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445730
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197417
!Sample_title = cy78_CD45_neg_1_D05_S521_comb
!Sample_geo_accession = GSM3197417
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445729
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197418
!Sample_title = Cy71_CD45_H10_S574_comb
!Sample_geo_accession = GSM3197418
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445728
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197419
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_D12_S432_comb
!Sample_geo_accession = GSM3197419
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445727
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197420
!Sample_title = cy81_Bulk_CD45_neg_C08_S128_comb
!Sample_geo_accession = GSM3197420
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445726
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197421
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_G07_S79_comb
!Sample_geo_accession = GSM3197421
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445725
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197422
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_A08_S392_comb
!Sample_geo_accession = GSM3197422
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445724
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197423
!Sample_title = cy78_CD45_neg_1_C10_S514_comb
!Sample_geo_accession = GSM3197423
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445723
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197424
!Sample_title = cy78_CD45_neg_3_D09_S717_comb
!Sample_geo_accession = GSM3197424
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445722
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197425
!Sample_title = Cy81_Bulk_CD45_C06_S126_comb
!Sample_geo_accession = GSM3197425
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445721
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197426
!Sample_title = cy82_CD45_pos_2_E07_S535_comb
!Sample_geo_accession = GSM3197426
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel82
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445720
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197427
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_G12_S180_comb
!Sample_geo_accession = GSM3197427
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445719
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197428
!Sample_title = Cy81_FNA_CD45_H10_S382_comb
!Sample_geo_accession = GSM3197428
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445718
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197429
!Sample_title = Cy80_II_CD45_B02_S878_comb
!Sample_geo_accession = GSM3197429
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445717
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197430
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_B10_S310_comb
!Sample_geo_accession = GSM3197430
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445716
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197431
!Sample_title = cy80_CD45_neg_E01_S913_comb
!Sample_geo_accession = GSM3197431
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445715
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197432
!Sample_title = Cy81_FNA_CD45_B11_S311_comb
!Sample_geo_accession = GSM3197432
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445714
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197433
!Sample_title = cy81_Bulk_CD45_neg_C04_S124_comb
!Sample_geo_accession = GSM3197433
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445713
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197434
!Sample_title = CY88_3_G07_S655_comb
!Sample_geo_accession = GSM3197434
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445712
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197435
!Sample_title = Cy81_Bulk_CD45_B12_S120_comb
!Sample_geo_accession = GSM3197435
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445711
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197436
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_G03_S75_comb
!Sample_geo_accession = GSM3197436
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445710
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3197437
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_F11_S455_comb
!Sample_geo_accession = GSM3197437
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445709
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3197438
!Sample_title = cy78_CD45_neg_3_B08_S692_comb
!Sample_geo_accession = GSM3197438
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445789
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197439
!Sample_title = cy78_CD45_neg_3_C09_S705_comb
!Sample_geo_accession = GSM3197439
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445788
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197440
!Sample_title = cy82_CD45_pos_1_H05_S569_comb
!Sample_geo_accession = GSM3197440
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel82
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445787
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197441
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_G09_S81_comb
!Sample_geo_accession = GSM3197441
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445786
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197442
!Sample_title = CY88_5_F11_S743_comb
!Sample_geo_accession = GSM3197442
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445687
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197443
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_B04_S112_comb
!Sample_geo_accession = GSM3197443
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445686
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197444
!Sample_title = cy80_CD45_neg_H03_S951_comb
!Sample_geo_accession = GSM3197444
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445685
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197445
!Sample_title = cy78_CD45_neg_1_H02_S566_comb
!Sample_geo_accession = GSM3197445
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445785
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197446
!Sample_title = CY88_5_C09_S705_comb
!Sample_geo_accession = GSM3197446
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445784
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197447
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_F07_S259_comb
!Sample_geo_accession = GSM3197447
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445783
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197448
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_C10_S34_comb
!Sample_geo_accession = GSM3197448
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445688
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^SAMPLE = GSM3197449
!Sample_title = cy81_Bulk_CD45_neg_B03_S111_comb
!Sample_geo_accession = GSM3197449
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy81_Bulk_CD45_neg_E08_S152_comb
!Sample_geo_accession = GSM3197450
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy84_Primary_CD45_neg_G07_S1039_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197453
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445680
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!Sample_data_row_count = 0
^SAMPLE = GSM3197454
!Sample_title = cy53_1_CD45_neg_D06_S330_comb
!Sample_geo_accession = GSM3197454
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445679
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^SAMPLE = GSM3197455
!Sample_title = Cy71_CD45_A10_S490_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3197463
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197464
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445742
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197465
!Sample_title = cy84_Primary_CD45_neg_A03_S963_comb
!Sample_geo_accession = GSM3197465
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445741
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197466
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_C07_S127_comb
!Sample_geo_accession = GSM3197466
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445740
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197467
!Sample_title = Cy71_CD45_D09_S525_comb
!Sample_geo_accession = GSM3197467
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445739
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197468
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_H03_S1143_comb
!Sample_geo_accession = GSM3197468
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445738
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197469
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_H10_S1150_comb
!Sample_geo_accession = GSM3197469
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445737
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197470
!Sample_title = CY89CORE11_F03_S159_comb
!Sample_geo_accession = GSM3197470
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445736
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197471
!Sample_title = CY89FNAQ2_B10_S406_comb
!Sample_geo_accession = GSM3197471
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445735
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197472
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_D02_S422_comb
!Sample_geo_accession = GSM3197472
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445734
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197473
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_D10_S46_comb
!Sample_geo_accession = GSM3197473
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_department = Klarman Cell Observatory
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!Sample_title = Cy80_II_CD45_F07_S931_comb
!Sample_geo_accession = GSM3197474
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p4_CD45_neg_PDL1_pos_A11_S395_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197477
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3197478
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197479
!Sample_title = cy84_Primary_CD45_neg_E12_S1020_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197480
!Sample_title = CY89NEG_A03_S3_comb
!Sample_geo_accession = GSM3197480
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197481
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445776
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197482
!Sample_title = cy78_CD45_neg_1_F05_S545_comb
!Sample_geo_accession = GSM3197482
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197483
!Sample_title = CY88_5_B07_S691_comb
!Sample_geo_accession = GSM3197483
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197484
!Sample_title = cy82_CD45_pos_2_F11_S551_comb
!Sample_geo_accession = GSM3197484
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197487
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197489
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_F09_S453_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09445768
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^SAMPLE = GSM3197490
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!Sample_geo_accession = GSM3197490
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446299
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197491
!Sample_title = Cy80_II_CD45_B12_S888_comb
!Sample_geo_accession = GSM3197491
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3197492
!Sample_title = cy80_CD45_neg_D09_S909_comb
!Sample_geo_accession = GSM3197492
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197493
!Sample_title = CY89CORE11_G08_S176_comb
!Sample_geo_accession = GSM3197493
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197494
!Sample_title = CY88_3_E10_S634_comb
!Sample_geo_accession = GSM3197494
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197495
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197496
!Sample_title = Cy80_II_CD45_A09_S873_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197497
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_B04_S688_comb
!Sample_geo_accession = GSM3197497
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446292
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^SAMPLE = GSM3197498
!Sample_title = cy81_Bulk_CD45_neg_F05_S161_comb
!Sample_geo_accession = GSM3197498
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446291
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197499
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_E06_S726_comb
!Sample_geo_accession = GSM3197499
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446290
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197500
!Sample_title = cy81_FNA_CD45_neg_G03_S1035_comb
!Sample_geo_accession = GSM3197500
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446289
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197501
!Sample_title = cy82_CD45_neg_1_D05_S233_comb
!Sample_geo_accession = GSM3197501
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446288
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197502
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_F11_S839_comb
!Sample_geo_accession = GSM3197502
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197503
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_F02_S830_comb
!Sample_geo_accession = GSM3197503
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3197504
!Sample_title = cy81_FNA_CD45_neg_G09_S1041_comb
!Sample_geo_accession = GSM3197504
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197505
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!Sample_geo_accession = GSM3197505
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446327
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197506
!Sample_title = CY89NEG_A02_S2_comb
!Sample_geo_accession = GSM3197506
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446326
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197507
!Sample_title = cy78_CD45_neg_3_F12_S744_comb
!Sample_geo_accession = GSM3197507
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy79_p4_CD45_neg_PDL1_pos_G03_S459_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_title = cy78_CD45_neg_3_A05_S677_comb
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!Sample_platform_id = GPL18573
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446316
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197517
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_A12_S780_comb
!Sample_geo_accession = GSM3197517
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446315
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197518
!Sample_title = cy78_CD45_neg_1_D12_S528_comb
!Sample_geo_accession = GSM3197518
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446314
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197519
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_A08_S1064_comb
!Sample_geo_accession = GSM3197519
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446313
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197520
!Sample_title = cy80_CD45_neg_D11_S911_comb
!Sample_geo_accession = GSM3197520
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446312
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197521
!Sample_title = Cy81_Bulk_CD45_E03_S147_comb
!Sample_geo_accession = GSM3197521
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446311
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197522
!Sample_title = CY89NEG_D12_S48_comb
!Sample_geo_accession = GSM3197522
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446310
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197523
!Sample_title = cy82_CD45_neg_2_H12_S288_comb
!Sample_geo_accession = GSM3197523
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446309
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3197524
!Sample_title = CY89A_CD45_POS_10_A07_S199_comb
!Sample_geo_accession = GSM3197524
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446308
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197525
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_E01_S1105_comb
!Sample_geo_accession = GSM3197525
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446383
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197526
!Sample_title = cy82_CD45_neg_3_D09_S813_comb
!Sample_geo_accession = GSM3197526
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197527
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_B03_S1071_comb
!Sample_geo_accession = GSM3197527
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197528
!Sample_title = CY88_5_C08_S704_comb
!Sample_geo_accession = GSM3197528
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy78_CD45_neg_3_C01_S697_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197531
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446376
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!Sample_data_row_count = 0
^SAMPLE = GSM3197532
!Sample_title = CY89CORE11_C08_S128_comb
!Sample_geo_accession = GSM3197532
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446375
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^SAMPLE = GSM3197533
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_D04_S1096_comb
!Sample_geo_accession = GSM3197533
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_CD45_neg_E06_S918_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446035
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197543
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_H11_S767_comb
!Sample_geo_accession = GSM3197543
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446034
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197544
!Sample_title = cy80_CD45_neg_B04_S880_comb
!Sample_geo_accession = GSM3197544
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446033
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197545
!Sample_title = Cy71_CD45_B12_S504_comb
!Sample_geo_accession = GSM3197545
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446032
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197546
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_A10_S106_comb
!Sample_geo_accession = GSM3197546
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446031
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197547
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_B10_S1078_comb
!Sample_geo_accession = GSM3197547
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446030
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197548
!Sample_title = cy78_CD45_neg_3_A12_S684_comb
!Sample_geo_accession = GSM3197548
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446029
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197549
!Sample_title = CY88_5_F05_S737_comb
!Sample_geo_accession = GSM3197549
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446028
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197550
!Sample_title = CY88_5_C05_S701_comb
!Sample_geo_accession = GSM3197550
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446027
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197551
!Sample_title = cy53_1_CD45_neg_B07_S307_comb
!Sample_geo_accession = GSM3197551
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446026
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197552
!Sample_title = CY88_3_G11_S659_comb
!Sample_geo_accession = GSM3197552
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446025
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197553
!Sample_title = Cy81_Bulk_CD45_A11_S107_comb
!Sample_geo_accession = GSM3197553
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197554
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_B03_S207_comb
!Sample_geo_accession = GSM3197554
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197555
!Sample_title = CY89CORE11_H06_S186_comb
!Sample_geo_accession = GSM3197555
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_G08_S80_comb
!Sample_geo_accession = GSM3197556
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446021
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197557
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_E04_S52_comb
!Sample_geo_accession = GSM3197557
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446020
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197558
!Sample_title = CY89FNAQ2_F12_S456_comb
!Sample_geo_accession = GSM3197558
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446019
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197559
!Sample_title = cy81_FNA_CD45_neg_F12_S1032_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446018
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197560
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_F02_S1118_comb
!Sample_geo_accession = GSM3197560
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446017
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197561
!Sample_title = cy78_CD45_neg_2_A12_S588_comb
!Sample_geo_accession = GSM3197561
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446016
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197562
!Sample_title = Cy71_CD45_E02_S530_comb
!Sample_geo_accession = GSM3197562
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446015
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197563
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_E11_S347_comb
!Sample_geo_accession = GSM3197563
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446014
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197564
!Sample_title = Cy71_CD45_B03_S495_comb
!Sample_geo_accession = GSM3197564
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446013
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197565
!Sample_title = Cy81_FNA_CD45_C08_S320_comb
!Sample_geo_accession = GSM3197565
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446012
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197566
!Sample_title = CY88_3_D03_S615_comb
!Sample_geo_accession = GSM3197566
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446011
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3197567
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_G03_S747_comb
!Sample_geo_accession = GSM3197567
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446010
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197568
!Sample_title = CY89NEG_F04_S64_comb
!Sample_geo_accession = GSM3197568
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446009
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197569
!Sample_title = Cy81_Bulk_CD45_C05_S125_comb
!Sample_geo_accession = GSM3197569
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
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!Sample_title = cy79_p4_CD45_neg_PDL1_pos_A12_S396_comb
!Sample_geo_accession = GSM3197570
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197571
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!Sample_geo_accession = GSM3197571
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197572
!Sample_title = cy80_CD45_neg_D01_S901_comb
!Sample_geo_accession = GSM3197572
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197573
!Sample_title = CY89NEG_D05_S41_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197574
!Sample_title = cy80_CD45_neg_C02_S890_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446074
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197575
!Sample_title = CY88_3_D09_S621_comb
!Sample_geo_accession = GSM3197575
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197576
!Sample_title = cy78_CD45_neg_1_D01_S517_comb
!Sample_geo_accession = GSM3197576
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_supplementary_file_1 = NONE
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy78_CD45_neg_3_B01_S685_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD45_neg_E10_S922_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3197583
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197584
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_C11_S419_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197585
!Sample_title = CY88_5_C02_S698_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446063
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197586
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_G03_S1131_comb
!Sample_geo_accession = GSM3197586
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446062
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197587
!Sample_title = cy78_CD45_neg_2_B10_S598_comb
!Sample_geo_accession = GSM3197587
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197588
!Sample_title = Cy71_CD45_F01_S541_comb
!Sample_geo_accession = GSM3197588
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446060
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^SAMPLE = GSM3197589
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!Sample_geo_accession = GSM3197589
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197590
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!Sample_geo_accession = GSM3197590
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_contact_country = USA
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^SAMPLE = GSM3197591
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_D10_S814_comb
!Sample_geo_accession = GSM3197591
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446056
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197592
!Sample_title = CY89NEG_F08_S68_comb
!Sample_geo_accession = GSM3197592
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446055
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!Sample_data_row_count = 0
^SAMPLE = GSM3197593
!Sample_title = CY89CORE11_D05_S137_comb
!Sample_geo_accession = GSM3197593
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446251
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197594
!Sample_title = cy78_CD45_neg_1_B06_S498_comb
!Sample_geo_accession = GSM3197594
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446250
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197595
!Sample_title = CY88_3_A02_S578_comb
!Sample_geo_accession = GSM3197595
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446059
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^SAMPLE = GSM3197596
!Sample_title = cy81_Bulk_CD45_neg_G04_S172_comb
!Sample_geo_accession = GSM3197596
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446249
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^SAMPLE = GSM3197597
!Sample_title = Cy81_Bulk_CD45_B04_S112_comb
!Sample_geo_accession = GSM3197597
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446248
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197598
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_F08_S836_comb
!Sample_geo_accession = GSM3197598
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197599
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_E01_S241_comb
!Sample_geo_accession = GSM3197599
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446246
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197600
!Sample_title = CY89CORE11_A03_S99_comb
!Sample_geo_accession = GSM3197600
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: Mal
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446245
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197601
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_D08_S332_comb
!Sample_geo_accession = GSM3197601
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446244
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197602
!Sample_title = cy78_CD45_neg_1_H03_S567_comb
!Sample_geo_accession = GSM3197602
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: post.treatment
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446243
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197603
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_D11_S1103_comb
!Sample_geo_accession = GSM3197603
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197604
!Sample_title = Cy71_CD45_G05_S557_comb
!Sample_geo_accession = GSM3197604
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3197605
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p3_CD45_neg_PDL1_neg_C10_S226_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197610
!Sample_title = cy78_CD45_neg_3_E07_S727_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197611
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_G07_S751_comb
!Sample_geo_accession = GSM3197611
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446234
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197612
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_C09_S225_comb
!Sample_geo_accession = GSM3197612
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446233
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197613
!Sample_title = cy78_CD45_neg_1_G12_S564_comb
!Sample_geo_accession = GSM3197613
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446232
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197614
!Sample_title = cy84_Primary_CD45_neg_E05_S1013_comb
!Sample_geo_accession = GSM3197614
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel84
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446231
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197615
!Sample_title = cy81_Bulk_CD45_neg_G07_S175_comb
!Sample_geo_accession = GSM3197615
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446230
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197616
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_B09_S213_comb
!Sample_geo_accession = GSM3197616
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446307
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197617
!Sample_title = cy78_CD45_neg_3_H02_S758_comb
!Sample_geo_accession = GSM3197617
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446306
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197618
!Sample_title = cy78_CD45_neg_3_F09_S741_comb
!Sample_geo_accession = GSM3197618
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446305
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3197619
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_H02_S278_comb
!Sample_geo_accession = GSM3197619
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446304
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197620
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_G04_S748_comb
!Sample_geo_accession = GSM3197620
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p3_CD45_neg_PDL1_neg_C02_S218_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = Cy81_FNA_CD45_F03_S351_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197627
!Sample_title = CY88_3_B08_S596_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_geo_accession = GSM3197629
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3197634
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197636
!Sample_title = Cy81_Bulk_CD45_B05_S113_comb
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197637
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197638
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!Sample_geo_accession = GSM3197638
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3197644
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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^SAMPLE = GSM3197645
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197647
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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^SAMPLE = GSM3197652
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^SAMPLE = GSM3197654
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446428
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197655
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_F02_S62_comb
!Sample_geo_accession = GSM3197655
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3197656
!Sample_title = Cy80_II_CD45_F01_S925_comb
!Sample_geo_accession = GSM3197656
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197657
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_G12_S1140_comb
!Sample_geo_accession = GSM3197657
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197658
!Sample_title = CY88_3_B09_S597_comb
!Sample_geo_accession = GSM3197658
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197659
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197660
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197661
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197662
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197663
!Sample_title = CY89FNAQ2_D06_S426_comb
!Sample_geo_accession = GSM3197663
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197669
!Sample_title = cy78_CD45_neg_2_C07_S607_comb
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy60_1_cd_45_neg_1_D11_S239_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197672
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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^SAMPLE = GSM3197678
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^SAMPLE = GSM3197680
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!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446435
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197681
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_B03_S399_comb
!Sample_geo_accession = GSM3197681
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446434
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197682
!Sample_title = cy78_CD45_neg_1_C01_S505_comb
!Sample_geo_accession = GSM3197682
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197683
!Sample_title = cy80_CD45_neg_B08_S884_comb
!Sample_geo_accession = GSM3197683
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446432
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197684
!Sample_title = cy78_CD45_neg_2_A05_S581_comb
!Sample_geo_accession = GSM3197684
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197685
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!Sample_geo_accession = GSM3197685
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197686
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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^SAMPLE = GSM3197687
!Sample_title = CY89FNAQ2_G04_S460_comb
!Sample_geo_accession = GSM3197687
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_row_count = 0
^SAMPLE = GSM3197688
!Sample_title = cy80_CD45_neg_F08_S932_comb
!Sample_geo_accession = GSM3197688
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446419
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197689
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_A02_S98_comb
!Sample_geo_accession = GSM3197689
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3197690
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197691
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197695
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197696
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197697
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446401
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197707
!Sample_title = Cy81_FNA_CD45_H09_S381_comb
!Sample_geo_accession = GSM3197707
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446400
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197708
!Sample_title = CY88_3_E07_S631_comb
!Sample_geo_accession = GSM3197708
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446399
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197709
!Sample_title = cy80_CD45_neg_E05_S917_comb
!Sample_geo_accession = GSM3197709
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446398
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197710
!Sample_title = Cy80_II_CD45_A01_S865_comb
!Sample_geo_accession = GSM3197710
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446397
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197711
!Sample_title = CY89NEG_A12_S12_comb
!Sample_geo_accession = GSM3197711
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446396
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197712
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_B03_S111_comb
!Sample_geo_accession = GSM3197712
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446395
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197713
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_G12_S276_comb
!Sample_geo_accession = GSM3197713
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446394
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197714
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_C06_S414_comb
!Sample_geo_accession = GSM3197714
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
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!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446393
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197715
!Sample_title = Cy81_Bulk_CD45_F12_S168_comb
!Sample_geo_accession = GSM3197715
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446392
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197716
!Sample_title = cy81_Bulk_CD45_neg_H12_S192_comb
!Sample_geo_accession = GSM3197716
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446391
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197717
!Sample_title = CY88_3_A08_S584_comb
!Sample_geo_accession = GSM3197717
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446390
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197718
!Sample_title = cy81_FNA_CD45_neg_D01_S997_comb
!Sample_geo_accession = GSM3197718
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446389
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197719
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_H09_S765_comb
!Sample_geo_accession = GSM3197719
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446388
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197720
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_E03_S339_comb
!Sample_geo_accession = GSM3197720
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446387
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197721
!Sample_title = Cy71_CD45_E06_S534_comb
!Sample_geo_accession = GSM3197721
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446386
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197722
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_C08_S1088_comb
!Sample_geo_accession = GSM3197722
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446385
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3197723
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_A09_S777_comb
!Sample_geo_accession = GSM3197723
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446425
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197724
!Sample_title = CY88_3_C06_S606_comb
!Sample_geo_accession = GSM3197724
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197725
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_C03_S219_comb
!Sample_geo_accession = GSM3197725
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy81_FNA_CD45_neg_D03_S999_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3197728
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197729
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197730
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_B07_S403_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197731
!Sample_title = cy81_FNA_CD45_neg_C11_S995_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197732
!Sample_title = CY88_5_A06_S678_comb
!Sample_geo_accession = GSM3197732
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446479
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197733
!Sample_title = cy80_CD45_neg_B03_S879_comb
!Sample_geo_accession = GSM3197733
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446478
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197734
!Sample_title = cy78_CD45_neg_3_C04_S700_comb
!Sample_geo_accession = GSM3197734
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446477
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197735
!Sample_title = CY84_PRIM_POS_ALL_6_D06_S426_comb
!Sample_geo_accession = GSM3197735
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446476
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197736
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_A06_S390_comb
!Sample_geo_accession = GSM3197736
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197737
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_H05_S281_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446474
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197738
!Sample_title = Cy71_CD45_C12_S516_comb
!Sample_geo_accession = GSM3197738
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446473
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3197739
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_H05_S1145_comb
!Sample_geo_accession = GSM3197739
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446472
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197740
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_C06_S126_comb
!Sample_geo_accession = GSM3197740
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446471
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197741
!Sample_title = CY88_3_A11_S587_comb
!Sample_geo_accession = GSM3197741
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel88
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197742
!Sample_title = CY88_3_F10_S646_comb
!Sample_geo_accession = GSM3197742
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_C09_S129_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p4_CD45_neg_PDL1_neg_E09_S1113_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197745
!Sample_title = CY88_3_G12_S660_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197746
!Sample_title = CY88_5_H04_S760_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197747
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_H01_S277_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197748
!Sample_title = CY89NEG_E03_S51_comb
!Sample_geo_accession = GSM3197748
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197749
!Sample_title = cy82_CD45_pos_2_F02_S542_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446464
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197750
!Sample_title = CY88_3_G01_S649_comb
!Sample_geo_accession = GSM3197750
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446461
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197751
!Sample_title = cy81_Bulk_CD45_neg_D01_S133_comb
!Sample_geo_accession = GSM3197751
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446460
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197752
!Sample_title = cy78_CD45_neg_1_C06_S510_comb
!Sample_geo_accession = GSM3197752
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446459
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197753
!Sample_title = Cy71_CD45_A06_S486_comb
!Sample_geo_accession = GSM3197753
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446080
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197754
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_G08_S848_comb
!Sample_geo_accession = GSM3197754
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446079
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197755
!Sample_title = Cy80_II_CD45_E11_S923_comb
!Sample_geo_accession = GSM3197755
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446155
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197756
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_F04_S448_comb
!Sample_geo_accession = GSM3197756
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446154
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197757
!Sample_title = CY88_5_F03_S735_comb
!Sample_geo_accession = GSM3197757
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
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!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446153
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197758
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_C12_S324_comb
!Sample_geo_accession = GSM3197758
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446152
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197759
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_A08_S104_comb
!Sample_geo_accession = GSM3197759
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446151
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197760
!Sample_title = Cy71_CD45_C09_S513_comb
!Sample_geo_accession = GSM3197760
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446150
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197761
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_G02_S74_comb
!Sample_geo_accession = GSM3197761
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446149
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197762
!Sample_title = cy82_CD45_pos_2_D12_S528_comb
!Sample_geo_accession = GSM3197762
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel82
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446148
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197763
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_D08_S1100_comb
!Sample_geo_accession = GSM3197763
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446147
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197764
!Sample_title = Cy71_CD45_E05_S533_comb
!Sample_geo_accession = GSM3197764
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446146
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197765
!Sample_title = cy84_Primary_CD45_neg_A10_S970_comb
!Sample_geo_accession = GSM3197765
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446145
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197766
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_D03_S327_comb
!Sample_geo_accession = GSM3197766
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy82_CD45_pos_3_A12_S12_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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^SAMPLE = GSM3197774
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197775
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446192
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197776
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_G09_S465_comb
!Sample_geo_accession = GSM3197776
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446186
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197777
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_C01_S217_comb
!Sample_geo_accession = GSM3197777
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446185
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197778
!Sample_title = Cy71_CD45_H12_S576_comb
!Sample_geo_accession = GSM3197778
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel71
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446184
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197779
!Sample_title = cy81_Bulk_CD45_neg_B04_S112_comb
!Sample_geo_accession = GSM3197779
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446597
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197780
!Sample_title = cy82_CD45_pos_3_H12_S96_comb
!Sample_geo_accession = GSM3197780
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446183
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197781
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_H11_S863_comb
!Sample_geo_accession = GSM3197781
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446182
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197782
!Sample_title = cy80_CD45_pos_PD1_pos_D09_S141_comb
!Sample_geo_accession = GSM3197782
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446181
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197783
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_B12_S312_comb
!Sample_geo_accession = GSM3197783
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446180
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197784
!Sample_title = cy78_CD45_neg_3_H04_S760_comb
!Sample_geo_accession = GSM3197784
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446179
!Sample_supplementary_file_1 = NONE
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!Sample_geo_accession = GSM3197785
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197786
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!Sample_geo_accession = GSM3197786
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197787
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!Sample_geo_accession = GSM3197787
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197789
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197790
!Sample_title = Cy80_II_CD45_E08_S920_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446173
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^SAMPLE = GSM3197791
!Sample_title = cy78_CD45_neg_1_D04_S520_comb
!Sample_geo_accession = GSM3197791
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197792
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_F01_S445_comb
!Sample_geo_accession = GSM3197792
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_supplementary_file_1 = NONE
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = Cy81_FNA_CD45_H05_S377_comb
!Sample_geo_accession = GSM3197794
!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy82_CD45_pos_1_H12_S576_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3197799
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197800
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446140
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197802
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_G03_S363_comb
!Sample_geo_accession = GSM3197802
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy82_CD45_pos_3_A08_S8_comb
!Sample_geo_accession = GSM3197803
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197804
!Sample_title = cy81_FNA_CD45_neg_E08_S1016_comb
!Sample_geo_accession = GSM3197804
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy81_Bulk_CD45_neg_A07_S103_comb
!Sample_geo_accession = GSM3197805
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197806
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197807
!Sample_title = CY88_3_F09_S645_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197808
!Sample_title = cy78_CD45_neg_3_A11_S683_comb
!Sample_geo_accession = GSM3197808
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197809
!Sample_title = cy94_cd45neg_cd90pos_D01_S325_comb
!Sample_geo_accession = GSM3197809
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446132
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197810
!Sample_title = cy81_Bulk_CD45_neg_H07_S187_comb
!Sample_geo_accession = GSM3197810
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446131
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197811
!Sample_title = CY88_5_A12_S684_comb
!Sample_geo_accession = GSM3197811
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446130
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197812
!Sample_title = cy82_CD45_pos_2_D03_S519_comb
!Sample_geo_accession = GSM3197812
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446129
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197813
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_A10_S1066_comb
!Sample_geo_accession = GSM3197813
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446128
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197814
!Sample_title = cy78_CD45_neg_2_B05_S593_comb
!Sample_geo_accession = GSM3197814
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197815
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!Sample_geo_accession = GSM3197815
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446126
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197816
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_H04_S184_comb
!Sample_geo_accession = GSM3197816
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446125
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197817
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_G10_S466_comb
!Sample_geo_accession = GSM3197817
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446124
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197818
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446123
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197819
!Sample_title = Cy71_CD45_A07_S487_comb
!Sample_geo_accession = GSM3197819
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446122
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197820
!Sample_title = Cy71_CD45_G11_S563_comb
!Sample_geo_accession = GSM3197820
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446121
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197821
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_F10_S454_comb
!Sample_geo_accession = GSM3197821
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446120
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197822
!Sample_title = CY88_3_G10_S658_comb
!Sample_geo_accession = GSM3197822
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446119
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197823
!Sample_title = cy81_FNA_CD45_neg_E01_S1009_comb
!Sample_geo_accession = GSM3197823
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446118
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197824
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_C03_S123_comb
!Sample_geo_accession = GSM3197824
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446117
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197825
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_G06_S750_comb
!Sample_geo_accession = GSM3197825
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446116
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197826
!Sample_title = cy81_FNA_CD45_neg_F01_S1021_comb
!Sample_geo_accession = GSM3197826
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446115
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197827
!Sample_title = CY88_3_D11_S623_comb
!Sample_geo_accession = GSM3197827
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446196
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197828
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_F12_S168_comb
!Sample_geo_accession = GSM3197828
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446195
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197829
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_C02_S698_comb
!Sample_geo_accession = GSM3197829
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446194
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197830
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_A02_S1058_comb
!Sample_geo_accession = GSM3197830
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446193
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197831
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_D07_S715_comb
!Sample_geo_accession = GSM3197831
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446285
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197832
!Sample_title = cy81_FNA_CD45_neg_H02_S1046_comb
!Sample_geo_accession = GSM3197832
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446280
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197833
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_B01_S109_comb
!Sample_geo_accession = GSM3197833
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446279
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197834
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_D08_S140_comb
!Sample_geo_accession = GSM3197834
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446278
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197835
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_D10_S142_comb
!Sample_geo_accession = GSM3197835
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446284
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197836
!Sample_title = cy81_FNA_CD45_neg_B03_S975_comb
!Sample_geo_accession = GSM3197836
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446283
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^SAMPLE = GSM3197837
!Sample_title = cy81_Bulk_CD45_neg_H02_S182_comb
!Sample_geo_accession = GSM3197837
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_CD45_neg_A10_S874_comb
!Sample_geo_accession = GSM3197838
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = CY88_3_H04_S664_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3197841
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197843
!Sample_title = cy78_CD45_neg_3_B10_S694_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197844
!Sample_title = cy53_1_CD45_neg_F07_S355_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446272
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197845
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_B06_S18_comb
!Sample_geo_accession = GSM3197845
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446344
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3197846
!Sample_title = Cy81_Bulk_CD45_F05_S161_comb
!Sample_geo_accession = GSM3197846
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197847
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_C08_S320_comb
!Sample_geo_accession = GSM3197847
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446342
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197848
!Sample_title = CY88_5_B02_S686_comb
!Sample_geo_accession = GSM3197848
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197849
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197850
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197851
!Sample_title = cy78_CD45_neg_3_G08_S752_comb
!Sample_geo_accession = GSM3197851
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197852
!Sample_title = cy81_FNA_CD45_neg_E10_S1018_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446337
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197853
!Sample_title = cy78_CD45_neg_1_C05_S509_comb
!Sample_geo_accession = GSM3197853
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446336
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!Sample_title = cy79_p4_CD45_neg_PDL1_pos_G02_S458_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197861
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446373
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197862
!Sample_title = Cy81_FNA_CD45_B04_S304_comb
!Sample_geo_accession = GSM3197862
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197863
!Sample_title = cy78_CD45_neg_3_B05_S689_comb
!Sample_geo_accession = GSM3197863
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197864
!Sample_title = CY88_3_D05_S617_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = Cy80_II_CD45_H12_S960_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197868
!Sample_title = cy78_CD45_neg_3_G03_S747_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197869
!Sample_title = cy81_FNA_CD45_neg_H10_S1054_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197870
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446365
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197871
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_C10_S322_comb
!Sample_geo_accession = GSM3197871
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3197872
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_F03_S735_comb
!Sample_geo_accession = GSM3197872
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3197873
!Sample_title = CY88_5_A09_S681_comb
!Sample_geo_accession = GSM3197873
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = Cy81_FNA_CD45_H01_S373_comb
!Sample_geo_accession = GSM3197877
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197878
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_D08_S812_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy81_FNA_CD45_neg_H11_S1055_comb
!Sample_geo_accession = GSM3197879
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446355
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197880
!Sample_title = cy84_Primary_CD45_neg_H02_S1046_comb
!Sample_geo_accession = GSM3197880
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446354
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197881
!Sample_title = Cy71_CD45_C07_S511_comb
!Sample_geo_accession = GSM3197881
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446353
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197882
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_G01_S169_comb
!Sample_geo_accession = GSM3197882
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446352
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197883
!Sample_title = Cy81_Bulk_CD45_A12_S108_comb
!Sample_geo_accession = GSM3197883
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446351
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197884
!Sample_title = CY88_3_A05_S581_comb
!Sample_geo_accession = GSM3197884
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446350
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197885
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_A09_S105_comb
!Sample_geo_accession = GSM3197885
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446349
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197886
!Sample_title = Cy80_II_CD45_A06_S870_comb
!Sample_geo_accession = GSM3197886
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446348
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197887
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_F04_S1120_comb
!Sample_geo_accession = GSM3197887
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446347
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197888
!Sample_title = CY88_3_E08_S632_comb
!Sample_geo_accession = GSM3197888
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446346
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197889
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_D08_S236_comb
!Sample_geo_accession = GSM3197889
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446345
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197890
!Sample_title = cy78_CD45_neg_1_B12_S504_comb
!Sample_geo_accession = GSM3197890
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197891
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!Sample_geo_accession = GSM3197891
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197892
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!Sample_geo_accession = GSM3197892
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446161
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197893
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_D10_S718_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197894
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!Sample_geo_accession = GSM3197894
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197895
!Sample_title = Cy81_Bulk_CD45_E06_S150_comb
!Sample_geo_accession = GSM3197895
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446158
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197896
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_H11_S287_comb
!Sample_geo_accession = GSM3197896
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446157
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197897
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_A08_S8_comb
!Sample_geo_accession = GSM3197897
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = Cy81_Bulk_CD45_A02_S98_comb
!Sample_geo_accession = GSM3197898
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3197899
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy78_CD45_neg_2_A10_S586_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446225
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197903
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_B09_S405_comb
!Sample_geo_accession = GSM3197903
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197904
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!Sample_geo_accession = GSM3197904
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_title = cy79_p5_CD45_neg_PDL1_pos_G08_S752_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = cy53_1_CD45_neg_C09_S321_comb
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!Sample_last_update_date = Nov 01 2018
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!Sample_title = cy53_1_CD45_neg_F08_S356_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197913
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446214
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197914
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_H06_S186_comb
!Sample_geo_accession = GSM3197914
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446213
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197915
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_D07_S235_comb
!Sample_geo_accession = GSM3197915
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446212
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197916
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_A03_S291_comb
!Sample_geo_accession = GSM3197916
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446211
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_C09_S33_comb
!Sample_geo_accession = GSM3197917
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446210
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197918
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_D05_S233_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446209
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197919
!Sample_title = cy78_CD45_neg_3_A09_S681_comb
!Sample_geo_accession = GSM3197919
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446208
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197920
!Sample_title = cy78_CD45_neg_1_A06_S486_comb
!Sample_geo_accession = GSM3197920
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446207
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197921
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_E07_S439_comb
!Sample_geo_accession = GSM3197921
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446110
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197922
!Sample_title = Cy71_CD45_F08_S548_comb
!Sample_geo_accession = GSM3197922
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446109
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197923
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_A05_S389_comb
!Sample_geo_accession = GSM3197923
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446108
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197924
!Sample_title = cy78_CD45_neg_1_F11_S551_comb
!Sample_geo_accession = GSM3197924
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446107
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197925
!Sample_title = cy80_CD45_neg_C11_S899_comb
!Sample_geo_accession = GSM3197925
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446106
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197926
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_E02_S338_comb
!Sample_geo_accession = GSM3197926
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446105
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197927
!Sample_title = Cy71_CD45_C04_S508_comb
!Sample_geo_accession = GSM3197927
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446104
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197928
!Sample_title = CY88_3_F08_S644_comb
!Sample_geo_accession = GSM3197928
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446103
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197929
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_E12_S252_comb
!Sample_geo_accession = GSM3197929
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446102
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197930
!Sample_title = Cy81_FNA_CD45_D11_S335_comb
!Sample_geo_accession = GSM3197930
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446101
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197931
!Sample_title = cy80_CD45_neg_C07_S895_comb
!Sample_geo_accession = GSM3197931
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446100
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197932
!Sample_title = CY88_5_D12_S720_comb
!Sample_geo_accession = GSM3197932
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446099
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197933
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_A08_S680_comb
!Sample_geo_accession = GSM3197933
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446098
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197934
!Sample_title = Cy71_CD45_H04_S568_comb
!Sample_geo_accession = GSM3197934
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446097
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197935
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_H08_S188_comb
!Sample_geo_accession = GSM3197935
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446096
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197936
!Sample_title = Cy81_FNA_CD45_C10_S322_comb
!Sample_geo_accession = GSM3197936
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446095
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197937
!Sample_title = cy84_Primary_CD45_neg_H07_S1051_comb
!Sample_geo_accession = GSM3197937
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446094
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197938
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_B01_S397_comb
!Sample_geo_accession = GSM3197938
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446093
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197939
!Sample_title = Cy71_CD45_D01_S517_comb
!Sample_geo_accession = GSM3197939
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3197940
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3197946
!Sample_title = cy80_CD45_neg_B02_S878_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197947
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_title = cy94_cd45neg_cd90pos_C09_S321_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446054
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197957
!Sample_title = CY75_1FNA_F07_S547_comb_1
!Sample_geo_accession = GSM3197957
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446048
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197958
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_A04_S100_comb
!Sample_geo_accession = GSM3197958
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446047
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197959
!Sample_title = CY89CORE11_A07_S103_comb
!Sample_geo_accession = GSM3197959
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446046
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197960
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_D10_S1102_comb
!Sample_geo_accession = GSM3197960
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446045
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197961
!Sample_title = cy81_FNA_CD45_neg_C07_S991_comb
!Sample_geo_accession = GSM3197961
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446044
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197962
!Sample_title = cy78_CD45_neg_3_A03_S675_comb
!Sample_geo_accession = GSM3197962
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446114
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197963
!Sample_title = Cy81_Bulk_CD45_G06_S174_comb
!Sample_geo_accession = GSM3197963
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446113
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3197964
!Sample_title = Cy71_CD45_H11_S575_comb
!Sample_geo_accession = GSM3197964
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446112
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197965
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_D01_S37_comb
!Sample_geo_accession = GSM3197965
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446111
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy94_cd45neg_cd90pos_D05_S329_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_title = cy53_1_CD45_neg_B06_S306_comb
!Sample_geo_accession = GSM3197967
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = CY75_1FNA_A05_S485_comb_2
!Sample_geo_accession = GSM3197968
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197969
!Sample_title = CY88_3_A04_S580_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197971
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446591
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197972
!Sample_title = CY89NEG_B08_S20_comb
!Sample_geo_accession = GSM3197972
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446590
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^SAMPLE = GSM3197973
!Sample_title = CY88_5_G08_S752_comb
!Sample_geo_accession = GSM3197973
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446589
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197974
!Sample_title = cy53_1_CD45_neg_G03_S363_comb
!Sample_geo_accession = GSM3197974
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3197975
!Sample_title = CY88_5_C11_S707_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3197979
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197982
!Sample_title = CY88_5_D04_S712_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446601
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3197983
!Sample_title = Cy80_II_CD45_C08_S896_comb
!Sample_geo_accession = GSM3197983
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446600
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197984
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_G12_S372_comb
!Sample_geo_accession = GSM3197984
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446599
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197985
!Sample_title = cy80_CD45_neg_A07_S871_comb
!Sample_geo_accession = GSM3197985
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197986
!Sample_title = Cy71_CD45_H01_S565_comb
!Sample_geo_accession = GSM3197986
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3197987
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3197988
!Sample_title = cy78_CD45_neg_3_D06_S714_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446572
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197989
!Sample_title = cy78_CD45_neg_3_C10_S706_comb
!Sample_geo_accession = GSM3197989
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3197990
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_F12_S360_comb
!Sample_geo_accession = GSM3197990
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446570
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3197991
!Sample_title = cy80_CD45_neg_E04_S916_comb
!Sample_geo_accession = GSM3197991
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3197997
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446561
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198000
!Sample_title = Cy81_Bulk_CD45_D12_S144_comb
!Sample_geo_accession = GSM3198000
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446560
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198001
!Sample_title = cy78_CD45_neg_3_C03_S699_comb
!Sample_geo_accession = GSM3198001
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198002
!Sample_title = cy78_CD45_neg_3_H08_S764_comb
!Sample_geo_accession = GSM3198002
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy53_1_CD45_neg_A07_S295_comb
!Sample_geo_accession = GSM3198003
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy79_p4_CD45_neg_PDL1_pos_B04_S400_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3198005
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198006
!Sample_title = CY89NEG_C08_S32_comb
!Sample_geo_accession = GSM3198006
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198007
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!Sample_geo_accession = GSM3198007
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446612
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198008
!Sample_title = Cy71_CD45_F05_S545_comb
!Sample_geo_accession = GSM3198008
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446611
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198009
!Sample_title = cy81_Bulk_CD45_neg_D05_S137_comb
!Sample_geo_accession = GSM3198009
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446610
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198010
!Sample_title = cy82_CD45_pos_3_G06_S78_comb
!Sample_geo_accession = GSM3198010
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446609
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198011
!Sample_title = CY88_5_G12_S756_comb
!Sample_geo_accession = GSM3198011
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446605
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198012
!Sample_title = CY88_5_C07_S703_comb
!Sample_geo_accession = GSM3198012
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446604
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198013
!Sample_title = cy80_CD45_neg_C01_S889_comb
!Sample_geo_accession = GSM3198013
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198014
!Sample_title = cy81_Bulk_CD45_neg_E10_S154_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447302
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198015
!Sample_title = cy81_Bulk_CD45_neg_H11_S191_comb
!Sample_geo_accession = GSM3198015
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446608
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198016
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_H12_S768_comb
!Sample_geo_accession = GSM3198016
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446607
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198017
!Sample_title = CY89CORE11_G10_S178_comb
!Sample_geo_accession = GSM3198017
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446606
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198018
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_G03_S171_comb
!Sample_geo_accession = GSM3198018
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447301
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198019
!Sample_title = CY89FNAQ2_G02_S458_comb
!Sample_geo_accession = GSM3198019
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447300
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_E03_S51_comb
!Sample_geo_accession = GSM3198020
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447299
!Sample_supplementary_file_1 = NONE
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!Sample_title = Cy81_Bulk_CD45_G03_S171_comb
!Sample_geo_accession = GSM3198021
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: CAF
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447298
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198022
!Sample_title = CY88_5_H01_S757_comb
!Sample_geo_accession = GSM3198022
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447297
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198023
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_A04_S1060_comb
!Sample_geo_accession = GSM3198023
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447296
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198024
!Sample_title = cy60_1_cd_45_neg_3_H06_S570_comb
!Sample_geo_accession = GSM3198024
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel60
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447295
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198025
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_G04_S76_comb
!Sample_geo_accession = GSM3198025
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
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!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447294
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198026
!Sample_title = cy78_CD45_neg_3_B04_S688_comb
!Sample_geo_accession = GSM3198026
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy84_Primary_CD45_neg_A07_S967_comb
!Sample_geo_accession = GSM3198027
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy79_p4_CD45_neg_PDL1_neg_C05_S1085_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy81_Bulk_CD45_neg_D10_S142_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy53_1_CD45_neg_D05_S329_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198031
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198032
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!Sample_geo_accession = GSM3198032
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198033
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_G01_S265_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198034
!Sample_title = Cy81_Bulk_CD45_D11_S143_comb
!Sample_geo_accession = GSM3198034
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447284
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198035
!Sample_title = CY89FNAQ2_H05_S473_comb
!Sample_geo_accession = GSM3198035
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447283
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198036
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_G09_S1137_comb
!Sample_geo_accession = GSM3198036
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447282
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198037
!Sample_title = CY88_5_E08_S728_comb
!Sample_geo_accession = GSM3198037
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447281
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198038
!Sample_title = cy84_Primary_CD45_neg_F05_S1025_comb
!Sample_geo_accession = GSM3198038
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447279
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198040
!Sample_title = cy78_CD45_neg_3_A08_S680_comb
!Sample_geo_accession = GSM3198040
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447278
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3198041
!Sample_title = cy81_Bulk_CD45_neg_F02_S158_comb
!Sample_geo_accession = GSM3198041
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447277
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^SAMPLE = GSM3198042
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_D09_S333_comb
!Sample_geo_accession = GSM3198042
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447276
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3198043
!Sample_title = cy78_CD45_neg_3_F08_S740_comb
!Sample_geo_accession = GSM3198043
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447275
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy79_p5_CD45_neg_PDL1_neg_C12_S804_comb
!Sample_geo_accession = GSM3198044
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198045
!Sample_title = Cy80_II_CD45_G03_S939_comb
!Sample_geo_accession = GSM3198045
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY88_5_C04_S700_comb
!Sample_geo_accession = GSM3198046
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy79_p4_CD45_neg_PDL1_neg_G05_S1133_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198048
!Sample_title = cy84_Primary_CD45_neg_H12_S1056_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198049
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_E03_S1107_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447269
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^SAMPLE = GSM3198050
!Sample_title = cy78_CD45_neg_3_G06_S750_comb
!Sample_geo_accession = GSM3198050
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447268
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198051
!Sample_title = cy81_FNA_CD45_neg_G07_S1039_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447267
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198052
!Sample_title = cy80_CD45_neg_A12_S876_comb
!Sample_geo_accession = GSM3198052
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447266
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198053
!Sample_title = cy78_CD45_neg_3_E10_S730_comb
!Sample_geo_accession = GSM3198053
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447265
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198054
!Sample_title = cy81_FNA_CD45_neg_G05_S1037_comb
!Sample_geo_accession = GSM3198054
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447264
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198055
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_G02_S842_comb
!Sample_geo_accession = GSM3198055
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447263
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198056
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_C04_S220_comb
!Sample_geo_accession = GSM3198056
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447262
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198057
!Sample_title = cy53_1_CD45_neg_H11_S383_comb
!Sample_geo_accession = GSM3198057
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447261
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198058
!Sample_title = cy81_Bulk_CD45_neg_H03_S183_comb
!Sample_geo_accession = GSM3198058
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447260
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198059
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_A10_S778_comb
!Sample_geo_accession = GSM3198059
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447259
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198060
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_F11_S263_comb
!Sample_geo_accession = GSM3198060
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447258
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198061
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_E06_S438_comb
!Sample_geo_accession = GSM3198061
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198066
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447252
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198067
!Sample_title = cy78_CD45_neg_1_G01_S553_comb
!Sample_geo_accession = GSM3198067
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198068
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_H02_S758_comb
!Sample_geo_accession = GSM3198068
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447317
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198078
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_D01_S229_comb
!Sample_geo_accession = GSM3198078
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447316
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198079
!Sample_title = cy78_CD45_neg_3_B11_S695_comb
!Sample_geo_accession = GSM3198079
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447315
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198080
!Sample_title = Cy81_Bulk_CD45_D04_S136_comb
!Sample_geo_accession = GSM3198080
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447314
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198081
!Sample_title = Cy81_FNA_CD45_H08_S380_comb
!Sample_geo_accession = GSM3198081
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447313
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198082
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_D12_S48_comb
!Sample_geo_accession = GSM3198082
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447312
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198083
!Sample_title = Cy71_CD45_B11_S503_comb
!Sample_geo_accession = GSM3198083
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447311
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198084
!Sample_title = CY89CORE11_D03_S135_comb
!Sample_geo_accession = GSM3198084
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447310
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198085
!Sample_title = Cy71_CD45_H02_S566_comb
!Sample_geo_accession = GSM3198085
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447309
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198086
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_E02_S242_comb
!Sample_geo_accession = GSM3198086
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3198092
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198093
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3198094
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447464
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198095
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_D11_S239_comb
!Sample_geo_accession = GSM3198095
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198096
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!Sample_geo_accession = GSM3198096
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = Cy80_II_CD45_C01_S889_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy78_CD45_neg_1_F07_S547_comb
!Sample_geo_accession = GSM3198098
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198101
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198102
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198103
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!Sample_geo_accession = GSM3198103
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3198104
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy79_p3_CD45_neg_PDL1_neg_F05_S257_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = Cy80_II_CD45_E12_S924_comb
!Sample_geo_accession = GSM3198115
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447438
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198121
!Sample_title = Cy80_II_CD45_B08_S884_comb
!Sample_geo_accession = GSM3198121
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447429
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198122
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_E02_S722_comb
!Sample_geo_accession = GSM3198122
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447428
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198123
!Sample_title = Cy80_II_CD45_E06_S918_comb
!Sample_geo_accession = GSM3198123
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447427
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198124
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_C06_S318_comb
!Sample_geo_accession = GSM3198124
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447426
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198125
!Sample_title = CY88_3_E06_S630_comb
!Sample_geo_accession = GSM3198125
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447425
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198126
!Sample_title = Cy71_CD45_E08_S536_comb
!Sample_geo_accession = GSM3198126
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447424
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198127
!Sample_title = cy82_CD45_pos_3_E02_S50_comb
!Sample_geo_accession = GSM3198127
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447423
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198128
!Sample_title = cy78_CD45_neg_1_C03_S507_comb
!Sample_geo_accession = GSM3198128
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447422
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198129
!Sample_title = cy80_CD45_neg_G09_S945_comb
!Sample_geo_accession = GSM3198129
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3198130
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198136
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198137
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy79_p5_CD45_neg_PDL1_neg_D07_S811_comb
!Sample_geo_accession = GSM3198138
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy82_CD45_pos_3_G12_S84_comb
!Sample_geo_accession = GSM3198139
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3198145
!Sample_title = cy82_CD45_pos_1_G08_S560_comb
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198146
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_B01_S205_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447404
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198147
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_C10_S130_comb
!Sample_geo_accession = GSM3198147
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447471
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^SAMPLE = GSM3198148
!Sample_title = CY84_PRIM_POS_ALL_6_E04_S436_comb
!Sample_geo_accession = GSM3198148
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198149
!Sample_title = cy81_FNA_CD45_neg_B07_S979_comb
!Sample_geo_accession = GSM3198149
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_title = cy78_CD45_neg_3_F11_S743_comb
!Sample_geo_accession = GSM3198150
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198151
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198153
!Sample_title = cy79_p5_CD45_neg_PDL1_pos_C12_S708_comb
!Sample_geo_accession = GSM3198153
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198154
!Sample_title = cy81_Bulk_CD45_neg_H08_S188_comb
!Sample_geo_accession = GSM3198154
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447329
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198155
!Sample_title = CY88_5_H11_S767_comb
!Sample_geo_accession = GSM3198155
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198161
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447392
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198173
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_C12_S228_comb
!Sample_geo_accession = GSM3198173
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447391
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198174
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_F02_S158_comb
!Sample_geo_accession = GSM3198174
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447390
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198175
!Sample_title = CY89NEG_G07_S79_comb
!Sample_geo_accession = GSM3198175
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel89
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447389
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198176
!Sample_title = cy78_CD45_neg_1_H10_S574_comb
!Sample_geo_accession = GSM3198176
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447388
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198177
!Sample_title = CY89CORE11_F06_S162_comb
!Sample_geo_accession = GSM3198177
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447387
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198178
!Sample_title = CY88_5_E10_S730_comb
!Sample_geo_accession = GSM3198178
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447386
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198179
!Sample_title = cy78_CD45_neg_1_G02_S554_comb
!Sample_geo_accession = GSM3198179
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447385
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198180
!Sample_title = CY89NEG_F06_S66_comb
!Sample_geo_accession = GSM3198180
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447384
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198181
!Sample_title = cy81_Bulk_CD45_neg_C01_S121_comb
!Sample_geo_accession = GSM3198181
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198182
!Sample_title = Cy81_FNA_CD45_F10_S358_comb
!Sample_geo_accession = GSM3198182
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD45_neg_E09_S921_comb
!Sample_geo_accession = GSM3198183
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p3_CD45_neg_PDL1_neg_G05_S269_comb
!Sample_geo_accession = GSM3198184
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198185
!Sample_title = CY88_5_G11_S755_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198187
!Sample_title = CY89NEG_E10_S58_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198188
!Sample_title = cy82_CD45_pos_3_A10_S10_comb
!Sample_geo_accession = GSM3198188
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198189
!Sample_title = CY89NEG_H12_S96_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447375
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3198190
!Sample_title = cy80_CD45_neg_G08_S944_comb
!Sample_geo_accession = GSM3198190
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198191
!Sample_title = Cy80_II_CD45_F10_S934_comb
!Sample_geo_accession = GSM3198191
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy82_CD45_pos_2_E03_S531_comb
!Sample_geo_accession = GSM3198192
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p3_CD45_neg_PDL1_neg_G10_S274_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198195
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198196
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198197
!Sample_title = Cy81_Bulk_CD45_G02_S170_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198198
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447366
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198199
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_F10_S166_comb
!Sample_geo_accession = GSM3198199
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447365
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198200
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_B12_S216_comb
!Sample_geo_accession = GSM3198200
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447364
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198201
!Sample_title = cy81_Bulk_CD45_neg_A02_S98_comb
!Sample_geo_accession = GSM3198201
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447363
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198202
!Sample_title = Cy71_CD45_A03_S483_comb
!Sample_geo_accession = GSM3198202
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198203
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!Sample_geo_accession = GSM3198203
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447361
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198204
!Sample_title = cy60_1_cd_45_neg_1_B11_S215_comb
!Sample_geo_accession = GSM3198204
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447360
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198205
!Sample_title = CY89CORE11_C02_S122_comb
!Sample_geo_accession = GSM3198205
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447435
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3198206
!Sample_title = cy81_Bulk_CD45_neg_E12_S156_comb
!Sample_geo_accession = GSM3198206
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447434
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198207
!Sample_title = Cy81_FNA_CD45_C02_S314_comb
!Sample_geo_accession = GSM3198207
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198210
!Sample_title = CY88_3_G04_S652_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = Cy81_Bulk_CD45_E01_S145_comb
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198213
!Sample_title = CY89CORE11_A10_S106_comb
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198214
!Sample_title = CY88_5_H07_S763_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198215
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447479
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198216
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_B11_S23_comb
!Sample_geo_accession = GSM3198216
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447478
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198217
!Sample_title = CY88_3_F04_S640_comb
!Sample_geo_accession = GSM3198217
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447477
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198218
!Sample_title = CY89NEG_G11_S83_comb
!Sample_geo_accession = GSM3198218
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447476
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198219
!Sample_title = CY88_5_G10_S754_comb
!Sample_geo_accession = GSM3198219
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447475
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198220
!Sample_title = CY88_5_C03_S699_comb
!Sample_geo_accession = GSM3198220
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447474
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198221
!Sample_title = cy78_CD45_neg_3_A10_S682_comb
!Sample_geo_accession = GSM3198221
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447473
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198222
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_D04_S40_comb
!Sample_geo_accession = GSM3198222
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447557
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198223
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_F06_S1122_comb
!Sample_geo_accession = GSM3198223
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447552
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198224
!Sample_title = cy78_CD45_neg_1_E09_S537_comb
!Sample_geo_accession = GSM3198224
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447551
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198225
!Sample_title = CY88_3_E11_S635_comb
!Sample_geo_accession = GSM3198225
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447556
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198226
!Sample_title = Cy80_II_CD45_C04_S892_comb
!Sample_geo_accession = GSM3198226
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447555
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198227
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_D02_S1094_comb
!Sample_geo_accession = GSM3198227
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447554
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198228
!Sample_title = Cy81_Bulk_CD45_C11_S131_comb
!Sample_geo_accession = GSM3198228
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447553
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198229
!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_C02_S26_comb
!Sample_geo_accession = GSM3198229
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447550
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198230
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_D01_S133_comb
!Sample_geo_accession = GSM3198230
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447549
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198231
!Sample_title = Cy71_CD45_B01_S493_comb
!Sample_geo_accession = GSM3198231
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447548
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198232
!Sample_title = CY89COREQ1_A09_S297_comb
!Sample_geo_accession = GSM3198232
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_geo_accession = GSM3198233
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = Cy71_CD45_E09_S537_comb
!Sample_geo_accession = GSM3198234
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy82_CD45_pos_3_C01_S25_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = cy81_FNA_CD45_neg_C06_S990_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = Cy81_FNA_CD45_C07_S319_comb
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3198240
!Sample_title = cy78_CD45_neg_1_C04_S508_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447539
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^SAMPLE = GSM3198241
!Sample_title = Cy80_II_CD45_B10_S886_comb
!Sample_geo_accession = GSM3198241
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447437
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198242
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_E08_S344_comb
!Sample_geo_accession = GSM3198242
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: CAF
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447436
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198243
!Sample_title = cy78_CD45_neg_3_A04_S676_comb
!Sample_geo_accession = GSM3198243
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447512
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198244
!Sample_title = Cy71_CD45_G12_S564_comb
!Sample_geo_accession = GSM3198244
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447511
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198245
!Sample_title = cy78_CD45_neg_3_G12_S756_comb
!Sample_geo_accession = GSM3198245
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel78
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447510
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198246
!Sample_title = CY75_1FNA_G06_S558_comb_4
!Sample_geo_accession = GSM3198246
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447509
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198247
!Sample_title = CY88_5_F10_S742_comb
!Sample_geo_accession = GSM3198247
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447508
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198248
!Sample_title = cy84_Primary_CD45_neg_D05_S1001_comb
!Sample_geo_accession = GSM3198248
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447507
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198249
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_G01_S841_comb
!Sample_geo_accession = GSM3198249
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447506
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198250
!Sample_title = cy79_p1_CD45_neg_PDL1_neg_AS_C4_R1_H05_S185_comb
!Sample_geo_accession = GSM3198250
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198251
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!Sample_geo_accession = GSM3198251
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198252
!Sample_title = CY88_5_B09_S693_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198257
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_C01_S409_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198258
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_contact_zip/postal_code = 02142
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447497
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^SAMPLE = GSM3198259
!Sample_title = CY88_3_G06_S654_comb
!Sample_geo_accession = GSM3198259
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy78_CD45_neg_3_H09_S765_comb
!Sample_geo_accession = GSM3198260
!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198267
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3198268
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198276
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3198277
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p4_CD45_neg_PDL1_neg_D09_S1101_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy72_CD45_pos_C08_S896_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = cy82_CD45_pos_2_B09_S501_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198283
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198284
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447525
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198285
!Sample_title = CY89COREQ1_A02_S290_comb
!Sample_geo_accession = GSM3198285
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447524
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198286
!Sample_title = cy60_1_cd_45_pos_3_C06_S318_comb
!Sample_geo_accession = GSM3198286
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447523
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^SAMPLE = GSM3198287
!Sample_title = CY94CD45POS_1_G06_S174_comb
!Sample_geo_accession = GSM3198287
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198288
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!Sample_geo_accession = GSM3198288
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447521
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3198289
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198290
!Sample_title = cy58_1_CD45_pos_F12_S648_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447519
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^SAMPLE = GSM3198291
!Sample_title = cy79_p5_CD45_pos_PD1_pos_C10_S610_comb
!Sample_geo_accession = GSM3198291
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_row_count = 0
^SAMPLE = GSM3198292
!Sample_title = cy74_CD45_pos_E12_S732_comb
!Sample_geo_accession = GSM3198292
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447517
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198293
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_G01_S265_comb
!Sample_geo_accession = GSM3198293
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447184
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198311
!Sample_title = CY89A_CD45_POS_10_G12_S276_comb
!Sample_geo_accession = GSM3198311
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447183
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!Sample_title = cy94_cd45pos_4_D05_S41_comb
!Sample_geo_accession = GSM3198312
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198313
!Sample_title = cy79_p4_CD45_pos_PD1_pos_A09_S297_comb
!Sample_geo_accession = GSM3198313
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198314
!Sample_title = Cy72_CD45_C01_S697_comb
!Sample_geo_accession = GSM3198314
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_contact_country = USA
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198316
!Sample_title = cy60_1_cd_45_pos_3_H11_S383_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198317
!Sample_title = Cy71_CD45_D07_S523_comb
!Sample_geo_accession = GSM3198317
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198318
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447176
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198319
!Sample_title = CY94CD45POS_1_D11_S143_comb
!Sample_geo_accession = GSM3198319
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy74_CD45_pos_D09_S717_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198325
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_CD45_neg_H12_S480_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446511
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198337
!Sample_title = cy84_Primary_CD45_pos_A09_S393_comb
!Sample_geo_accession = GSM3198337
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446510
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198338
!Sample_title = cy84_Met_CD45_pos_C08_S896_comb
!Sample_geo_accession = GSM3198338
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446509
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_B10_S406_comb
!Sample_geo_accession = GSM3198339
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_supplementary_file_1 = NONE
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!Sample_title = Cy81_FNA_CD45_D07_S235_comb
!Sample_geo_accession = GSM3198340
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198341
!Sample_title = Cy72_CD45_D07_S715_comb
!Sample_geo_accession = GSM3198341
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446506
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198342
!Sample_title = cy79_p4_CD45_pos_PD1_pos_G07_S367_comb
!Sample_geo_accession = GSM3198342
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_row_count = 0
^SAMPLE = GSM3198343
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_H08_S572_comb
!Sample_geo_accession = GSM3198343
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198344
!Sample_title = cy80_CD45_neg_C11_S419_comb
!Sample_geo_accession = GSM3198344
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446503
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198345
!Sample_title = Cy72_CD45_E08_S728_comb
!Sample_geo_accession = GSM3198345
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446502
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198346
!Sample_title = cy72_CD45_pos_B03_S879_comb
!Sample_geo_accession = GSM3198346
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198347
!Sample_title = cy84_Primary_CD45_pos_E05_S437_comb
!Sample_geo_accession = GSM3198347
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198348
!Sample_title = cy80_CD45_pos_PD1_pos_G05_S173_comb
!Sample_geo_accession = GSM3198348
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198349
!Sample_title = Cy71_CD45_B07_S499_comb
!Sample_geo_accession = GSM3198349
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198350
!Sample_title = cy94_cd45pos_A05_S101_comb
!Sample_geo_accession = GSM3198350
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198351
!Sample_title = cy53_1_CD45_pos_1_H03_S87_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198352
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_C02_S218_comb
!Sample_geo_accession = GSM3198352
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198353
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_C08_S224_comb
!Sample_geo_accession = GSM3198353
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446494
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198354
!Sample_title = cy72_CD45_pos_G10_S946_comb
!Sample_geo_accession = GSM3198354
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446493
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198355
!Sample_title = cy84_Primary_CD45_pos_H09_S477_comb
!Sample_geo_accession = GSM3198355
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446492
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^SAMPLE = GSM3198356
!Sample_title = cy72_CD45_pos_F07_S931_comb
!Sample_geo_accession = GSM3198356
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446491
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198357
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!Sample_geo_accession = GSM3198357
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446490
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198358
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!Sample_geo_accession = GSM3198358
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198359
!Sample_title = cy58_1_CD45_pos_D06_S618_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446488
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^SAMPLE = GSM3198360
!Sample_title = cy80_CD45_pos_PD1_pos_E04_S148_comb
!Sample_geo_accession = GSM3198360
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446487
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3198361
!Sample_title = cy60_1_cd_45_pos_3_F04_S352_comb
!Sample_geo_accession = GSM3198361
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447287
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198362
!Sample_title = cy72_CD45_pos_A06_S870_comb
!Sample_geo_accession = GSM3198362
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3198380
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198388
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446525
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198406
!Sample_title = CY94CD45POS_1_H08_S188_comb
!Sample_geo_accession = GSM3198406
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446524
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198407
!Sample_title = cy58_1_CD45_pos_A07_S583_comb
!Sample_geo_accession = GSM3198407
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_H03_S279_comb
!Sample_geo_accession = GSM3198408
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3198409
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!Sample_geo_accession = GSM3198409
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3198410
!Sample_title = cy74_CD45_pos_A09_S681_comb
!Sample_geo_accession = GSM3198410
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198411
!Sample_title = cy74_CD45_pos_D02_S710_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_row_count = 0
^SAMPLE = GSM3198412
!Sample_title = cy94_cd45neg_cd90pos_G06_S366_comb
!Sample_geo_accession = GSM3198412
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198413
!Sample_title = cy79_p5_CD45_pos_PD1_pos_F06_S642_comb
!Sample_geo_accession = GSM3198413
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446582
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^SAMPLE = GSM3198414
!Sample_title = cy72_CD45_pos_E08_S920_comb
!Sample_geo_accession = GSM3198414
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel72
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446581
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198415
!Sample_title = cy80_CD45_pos_PD1_pos_F05_S161_comb
!Sample_geo_accession = GSM3198415
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446580
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198416
!Sample_title = cy60_1_cd_45_pos_4_C03_S27_comb
!Sample_geo_accession = GSM3198416
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446579
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198417
!Sample_title = cy84_Primary_CD45_pos_G06_S462_comb
!Sample_geo_accession = GSM3198417
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198418
!Sample_title = cy84_Primary_CD45_pos_C01_S409_comb
!Sample_geo_accession = GSM3198418
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198419
!Sample_title = Cy72_CD45_C07_S703_comb
!Sample_geo_accession = GSM3198419
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446576
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198420
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_C04_S412_comb
!Sample_geo_accession = GSM3198420
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446575
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198421
!Sample_title = cy94_cd45pos_G03_S171_comb
!Sample_geo_accession = GSM3198421
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447240
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198422
!Sample_title = cy72_CD45_pos_H01_S949_comb
!Sample_geo_accession = GSM3198422
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel72
!Sample_characteristics_ch1 = treatment-group: post.treatment
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!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447239
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198423
!Sample_title = cy94_cd45pos_D12_S144_comb
!Sample_geo_accession = GSM3198423
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447238
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198424
!Sample_title = cy80_CD45_pos_PD1_pos_G01_S169_comb
!Sample_geo_accession = GSM3198424
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447237
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198425
!Sample_title = cy80_CD45_pos_PD1_pos_B11_S119_comb
!Sample_geo_accession = GSM3198425
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447236
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198426
!Sample_title = CY89A_CD45_POS_6_G11_S179_comb
!Sample_geo_accession = GSM3198426
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447235
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198427
!Sample_title = cy84_Met_CD45_pos_G05_S941_comb
!Sample_geo_accession = GSM3198427
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3198428
!Sample_title = cy74_CD45_pos_F12_S744_comb
!Sample_geo_accession = GSM3198428
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447233
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3198429
!Sample_title = cy80_CD45_pos_PD1_pos_D12_S144_comb
!Sample_geo_accession = GSM3198429
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447232
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3198430
!Sample_title = cy79_p4_CD45_pos_PD1_pos_C11_S323_comb
!Sample_geo_accession = GSM3198430
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447231
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198431
!Sample_title = cy88_cd_45_pos_3_F07_S643_comb
!Sample_geo_accession = GSM3198431
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3198439
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447084
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy60_1_cd_45_pos_4_C05_S29_comb
!Sample_geo_accession = GSM3198458
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy72_CD45_pos_F03_S927_comb
!Sample_geo_accession = GSM3198459
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_Cd45_pos_PD1_pos_S159_G03_S159_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy74_CD45_pos_C09_S705_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY58_1_CD45_A10_S970_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198463
!Sample_title = cy82_CD45_pos_2_G03_S555_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198464
!Sample_title = Cy72_CD45_D12_S720_comb
!Sample_geo_accession = GSM3198464
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447077
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198465
!Sample_title = CY89A_Core_15_H06_S90_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198474
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy79_p5_CD45_pos_PD1_pos_D02_S614_comb
!Sample_geo_accession = GSM3198475
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_title = cy72_CD45_pos_A12_S876_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel72
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447043
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198484
!Sample_title = Cy81_FNA_CD45_F01_S253_comb
!Sample_geo_accession = GSM3198484
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447042
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198485
!Sample_title = cy80_Cd45_pos_PD1_pos_S138_F06_S138_comb
!Sample_geo_accession = GSM3198485
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447041
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198486
!Sample_title = Cy74_CD45_A08_S392_comb
!Sample_geo_accession = GSM3198486
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447040
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198487
!Sample_title = Cy71_CD45_G06_S558_comb
!Sample_geo_accession = GSM3198487
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447039
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198488
!Sample_title = Cy74_CD45_A04_S388_comb
!Sample_geo_accession = GSM3198488
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447038
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198489
!Sample_title = CY58_1_CD45_B01_S973_comb
!Sample_geo_accession = GSM3198489
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel58
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447037
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198490
!Sample_title = cy94_cd45pos_4_E12_S60_comb
!Sample_geo_accession = GSM3198490
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447036
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198491
!Sample_title = CY89A_CD45_POS_6_B12_S120_comb
!Sample_geo_accession = GSM3198491
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198492
!Sample_title = CY89COREQ1_F09_S357_comb
!Sample_geo_accession = GSM3198492
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198493
!Sample_title = cy84_Primary_CD45_pos_E02_S434_comb
!Sample_geo_accession = GSM3198493
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198497
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198498
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198499
!Sample_title = cy84_Met_CD45_pos_D03_S903_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447027
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198500
!Sample_title = cy58_1_CD45_pos_H01_S661_comb
!Sample_geo_accession = GSM3198500
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198507
!Sample_title = cy74_CD45_pos_B05_S689_comb
!Sample_geo_accession = GSM3198507
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198508
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy94_cd45pos_4_B03_S15_comb
!Sample_geo_accession = GSM3198509
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3198510
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198516
!Sample_title = cy58_1_CD45_pos_B08_S596_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198517
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446999
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198518
!Sample_title = CY89A_CD45_POS_6_D03_S135_comb
!Sample_geo_accession = GSM3198518
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198519
!Sample_title = cy94_cd45pos_F03_S159_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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!Sample_geo_accession = GSM3198520
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198522
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198523
!Sample_title = cy82_CD45_pos_3_G08_S80_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198524
!Sample_title = CY89FNA_D02_S230_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198525
!Sample_title = cy80_CD45_neg_F06_S450_comb
!Sample_geo_accession = GSM3198525
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446995
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198526
!Sample_title = cy94_cd45pos_4_C09_S33_comb
!Sample_geo_accession = GSM3198526
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446994
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY94CD45POS_1_G11_S179_comb
!Sample_geo_accession = GSM3198528
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3198529
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198532
!Sample_title = cy88_cd_45_pos_3_B05_S593_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447054
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3198533
!Sample_title = CY88CD45_150813_F01_S349_comb
!Sample_geo_accession = GSM3198533
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447053
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^SAMPLE = GSM3198534
!Sample_title = cy80_Cd45_pos_Pd1_neg_S251_C11_S251_comb
!Sample_geo_accession = GSM3198534
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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^SAMPLE = GSM3198543
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447101
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198544
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_C10_S226_comb
!Sample_geo_accession = GSM3198544
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447100
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198545
!Sample_title = CY89A_CD45_POS_10_A06_S198_comb
!Sample_geo_accession = GSM3198545
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447099
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198546
!Sample_title = cy74_CD45_pos_G02_S746_comb
!Sample_geo_accession = GSM3198546
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447098
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198547
!Sample_title = cy94_cd45pos_4_G07_S79_comb
!Sample_geo_accession = GSM3198547
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447097
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198548
!Sample_title = cy94_cd45pos_4_G11_S83_comb
!Sample_geo_accession = GSM3198548
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447096
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198549
!Sample_title = cy79_p5_CD45_pos_PD1_pos_F08_S644_comb
!Sample_geo_accession = GSM3198549
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447095
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198550
!Sample_title = CY84_PRIM_POS_ALL_6_A07_S391_comb
!Sample_geo_accession = GSM3198550
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447168
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198551
!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_H12_S1056_comb
!Sample_geo_accession = GSM3198551
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel60
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447167
!Sample_supplementary_file_1 = NONE
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447158
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198561
!Sample_title = cy84_Primary_CD45_pos_C06_S414_comb
!Sample_geo_accession = GSM3198561
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447157
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198562
!Sample_title = CY89A_CD45_POS_6_G10_S178_comb
!Sample_geo_accession = GSM3198562
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447156
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy80_Cd45_pos_PD1_pos_S157_G01_S157_comb
!Sample_geo_accession = GSM3198563
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447155
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198564
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!Sample_geo_accession = GSM3198564
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198565
!Sample_title = cy84_Met_CD45_pos_B05_S881_comb
!Sample_geo_accession = GSM3198565
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198566
!Sample_title = Cy74_CD45_E04_S436_comb
!Sample_geo_accession = GSM3198566
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447152
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^SAMPLE = GSM3198567
!Sample_title = CY88CD45_150813_B03_S303_comb
!Sample_geo_accession = GSM3198567
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447151
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3198568
!Sample_title = cy80_CD45_neg_B06_S402_comb
!Sample_geo_accession = GSM3198568
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447150
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198569
!Sample_title = CY94CD45POS_1_C07_S127_comb
!Sample_geo_accession = GSM3198569
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447149
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198570
!Sample_title = cy79_p4_CD45_pos_PD1_pos_A10_S298_comb
!Sample_geo_accession = GSM3198570
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198571
!Sample_title = Cy81_FNA_CD45_A02_S194_comb
!Sample_geo_accession = GSM3198571
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_CD45_neg_G12_S468_comb
!Sample_geo_accession = GSM3198572
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198574
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198575
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447129
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^SAMPLE = GSM3198576
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_G09_S273_comb
!Sample_geo_accession = GSM3198576
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198577
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198586
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447119
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198587
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_B06_S210_comb
!Sample_geo_accession = GSM3198587
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447118
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198588
!Sample_title = cy80_Cd45_pos_Pd1_neg_S194_A02_S194_comb
!Sample_geo_accession = GSM3198588
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447117
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198589
!Sample_title = Cy81_FNA_CD45_D11_S239_comb
!Sample_geo_accession = GSM3198589
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy80_Cd45_pos_PD1_pos_S161_G05_S161_comb
!Sample_geo_accession = GSM3198590
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198591
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198592
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!Sample_geo_accession = GSM3198592
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198593
!Sample_title = cy79_p5_CD45_pos_PD1_pos_E09_S633_comb
!Sample_geo_accession = GSM3198593
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198594
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!Sample_geo_accession = GSM3198594
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447110
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198595
!Sample_title = cy80_CD45_pos_PD1_pos_B12_S120_comb
!Sample_geo_accession = GSM3198595
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_geo_accession = GSM3198596
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = CY89A_Core_15_G05_S77_comb
!Sample_geo_accession = GSM3198597
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY89A_CD45_POS_6_C08_S128_comb
!Sample_geo_accession = GSM3198598
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY58_1_CD45_F10_S1030_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = Cy81_FNA_CD45_C06_S222_comb
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198601
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198602
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_D07_S235_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198603
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447145
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198604
!Sample_title = cy53_1_CD45_pos_2_A09_S969_comb
!Sample_geo_accession = GSM3198604
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447144
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198605
!Sample_title = cy80_CD45_neg_A05_S389_comb
!Sample_geo_accession = GSM3198605
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447143
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198606
!Sample_title = cy80_CD45_neg_D03_S423_comb
!Sample_geo_accession = GSM3198606
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447142
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198607
!Sample_title = cy94_cd45pos_4_D01_S37_comb
!Sample_geo_accession = GSM3198607
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447141
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198608
!Sample_title = cy60_1_cd_45_pos_3_D01_S325_comb
!Sample_geo_accession = GSM3198608
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447140
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198609
!Sample_title = cy82_CD45_pos_2_A07_S487_comb
!Sample_geo_accession = GSM3198609
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447139
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198610
!Sample_title = CY89A_CD45_POS_6_G02_S170_comb
!Sample_geo_accession = GSM3198610
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447138
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198611
!Sample_title = cy53_1_CD45_pos_1_F06_S66_comb
!Sample_geo_accession = GSM3198611
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447137
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198612
!Sample_title = cy53_1_CD45_pos_1_G06_S78_comb
!Sample_geo_accession = GSM3198612
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3198613
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198619
!Sample_title = cy88_cd45pos_5_F05_S257_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198628
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447195
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198630
!Sample_title = cy60_1_cd_45_pos_3_A02_S290_comb
!Sample_geo_accession = GSM3198630
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel60
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447194
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198631
!Sample_title = CY89A_CD45_POS_10_H07_S283_comb
!Sample_geo_accession = GSM3198631
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446918
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198632
!Sample_title = cy80_Cd45_pos_PD1_pos_S137_F05_S137_comb
!Sample_geo_accession = GSM3198632
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446917
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198633
!Sample_title = cy79_p4_CD45_pos_PD1_pos_E09_S345_comb
!Sample_geo_accession = GSM3198633
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446916
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198634
!Sample_title = cy84_Primary_CD45_pos_B11_S407_comb
!Sample_geo_accession = GSM3198634
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446915
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198635
!Sample_title = cy80_CD45_pos_PD1_pos_H03_S183_comb
!Sample_geo_accession = GSM3198635
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446913
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198636
!Sample_title = cy80_Cd45_pos_Pd1_neg_S340_G04_S340_comb
!Sample_geo_accession = GSM3198636
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446912
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198637
!Sample_title = cy79_p5_CD45_pos_PD1_pos_G05_S653_comb
!Sample_geo_accession = GSM3198637
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446911
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198638
!Sample_title = cy88_cd_45_pos_C09_S417_comb
!Sample_geo_accession = GSM3198638
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446986
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3198645
!Sample_title = CY89A_CD45_POS_6_B02_S110_comb
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^SAMPLE = GSM3198646
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198655
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446969
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198656
!Sample_title = cy80_Cd45_pos_PD1_pos_A09_S21_comb
!Sample_geo_accession = GSM3198656
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3198657
!Sample_title = cy88_cd_45_pos_E01_S433_comb
!Sample_geo_accession = GSM3198657
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3198658
!Sample_title = cy58_1_CD45_pos_G09_S657_comb
!Sample_geo_accession = GSM3198658
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3198659
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198661
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!Sample_geo_accession = GSM3198661
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447288
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^SAMPLE = GSM3198662
!Sample_title = cy58_1_CD45_pos_B07_S595_comb
!Sample_geo_accession = GSM3198662
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198663
!Sample_title = cy58_1_CD45_pos_D03_S615_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198664
!Sample_title = cy72_CD45_pos_D10_S910_comb
!Sample_geo_accession = GSM3198664
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy82_CD45_pos_2_A05_S485_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446938
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198673
!Sample_title = cy58_1_CD45_pos_C11_S611_comb
!Sample_geo_accession = GSM3198673
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446937
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198674
!Sample_title = cy60_1_cd_45_pos_4_E02_S50_comb
!Sample_geo_accession = GSM3198674
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198675
!Sample_title = cy58_1_CD45_pos_G04_S652_comb
!Sample_geo_accession = GSM3198675
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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^SAMPLE = GSM3198676
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!Sample_geo_accession = GSM3198676
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198677
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!Sample_geo_accession = GSM3198677
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198678
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!Sample_geo_accession = GSM3198678
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198679
!Sample_title = cy88_cd_45_pos_H10_S478_comb
!Sample_geo_accession = GSM3198679
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198680
!Sample_title = cy88_cd45pos_5_C03_S219_comb
!Sample_geo_accession = GSM3198680
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446930
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198681
!Sample_title = CY89A_Core_15_C08_S32_comb
!Sample_geo_accession = GSM3198681
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy88_cd_45_pos_H07_S475_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = cy84_Primary_CD45_pos_D10_S430_comb
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD45_neg_C12_S420_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_title = Cy74_CD45_H12_S480_comb
!Sample_geo_accession = GSM3198716
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198723
!Sample_title = CY89FNA_A02_S194_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446860
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198725
!Sample_title = Cy72_CD45_A11_S683_comb
!Sample_geo_accession = GSM3198725
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = CY89A_Core_15_B05_S17_comb
!Sample_geo_accession = GSM3198726
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198727
!Sample_title = CY94CD45POS_1_H01_S181_comb
!Sample_geo_accession = GSM3198727
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = Cy81_FNA_CD45_C11_S227_comb
!Sample_geo_accession = GSM3198728
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198729
!Sample_title = cy80_Cd45_pos_Pd1_neg_S265_D01_S265_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198730
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198731
!Sample_title = Cy71_CD45_F03_S543_comb
!Sample_geo_accession = GSM3198731
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198732
!Sample_title = CY89COREQ1_C03_S315_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198733
!Sample_title = cy72_CD45_pos_A05_S869_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_supplementary_file_1 = NONE
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!Sample_geo_accession = GSM3198734
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY88CD45POS_2_D11_S431_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = Cy72_CD45_E10_S730_comb
!Sample_geo_accession = GSM3198736
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198740
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_B12_S408_comb
!Sample_geo_accession = GSM3198740
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198750
!Sample_title = CY58_1_CD45_E05_S1013_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3198751
!Sample_title = Cy71_CD45_C01_S505_comb
!Sample_geo_accession = GSM3198751
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198752
!Sample_title = cy80_Cd45_pos_Pd1_neg_S364_H04_S364_comb
!Sample_geo_accession = GSM3198752
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = CY58_1_CD45_F04_S1024_comb
!Sample_geo_accession = GSM3198753
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198757
!Sample_title = cy53_1_CD45_pos_2_G02_S1034_comb
!Sample_geo_accession = GSM3198757
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198758
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3198759
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446950
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198768
!Sample_title = cy58_1_CD45_pos_F10_S646_comb
!Sample_geo_accession = GSM3198768
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198770
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!Sample_geo_accession = GSM3198770
!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198772
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198773
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198775
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198776
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198783
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198784
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3198785
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446721
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198794
!Sample_title = CY89FNA_G10_S274_comb
!Sample_geo_accession = GSM3198794
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446720
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198795
!Sample_title = CY88CD45POS_7_H05_S281_comb
!Sample_geo_accession = GSM3198795
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446719
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198796
!Sample_title = Cy72_CD45_F05_S737_comb
!Sample_geo_accession = GSM3198796
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446718
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198797
!Sample_title = cy84_Primary_CD45_pos_B09_S405_comb
!Sample_geo_accession = GSM3198797
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446717
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198798
!Sample_title = CY89A_CD45_POS_6_D04_S136_comb
!Sample_geo_accession = GSM3198798
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446716
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198799
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_B03_S399_comb
!Sample_geo_accession = GSM3198799
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446715
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198800
!Sample_title = CY88CD45POS_7_G05_S269_comb
!Sample_geo_accession = GSM3198800
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446714
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198801
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_B08_S212_comb
!Sample_geo_accession = GSM3198801
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cell type: T.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446713
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198802
!Sample_title = cy60_1_cd_45_pos_3_C03_S315_comb
!Sample_geo_accession = GSM3198802
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel60
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446712
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198803
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_B02_S206_comb
!Sample_geo_accession = GSM3198803
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446779
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198804
!Sample_title = Cy74_CD45_D03_S423_comb
!Sample_geo_accession = GSM3198804
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446778
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198805
!Sample_title = cy72_CD45_pos_B02_S878_comb
!Sample_geo_accession = GSM3198805
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel72
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446776
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198806
!Sample_title = cy53_1_CD45_pos_2_B01_S973_comb
!Sample_geo_accession = GSM3198806
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446775
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198807
!Sample_title = cy94_cd45pos_4_C01_S25_comb
!Sample_geo_accession = GSM3198807
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446774
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198808
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_C10_S418_comb
!Sample_geo_accession = GSM3198808
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446773
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198809
!Sample_title = cy53_1_CD45_pos_2_B05_S977_comb
!Sample_geo_accession = GSM3198809
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446772
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198810
!Sample_title = cy80_Cd45_pos_PD1_pos_D11_S95_comb
!Sample_geo_accession = GSM3198810
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446771
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198811
!Sample_title = cy53_1_CD45_pos_1_D10_S46_comb
!Sample_geo_accession = GSM3198811
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446770
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198812
!Sample_title = Cy74_CD45_G03_S459_comb
!Sample_geo_accession = GSM3198812
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446683
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198813
!Sample_title = CY89COREQ1_D10_S334_comb
!Sample_geo_accession = GSM3198813
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446749
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198814
!Sample_title = cy80_Cd45_pos_PD1_pos_A06_S18_comb
!Sample_geo_accession = GSM3198814
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel80
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446748
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198815
!Sample_title = Cy81_FNA_CD45_A07_S199_comb
!Sample_geo_accession = GSM3198815
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446747
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198816
!Sample_title = CY89FNA_C08_S224_comb
!Sample_geo_accession = GSM3198816
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446746
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198817
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_D02_S422_comb
!Sample_geo_accession = GSM3198817
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446745
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198818
!Sample_title = CY88CD45_150813_G05_S365_comb
!Sample_geo_accession = GSM3198818
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446744
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198819
!Sample_title = cy53_1_CD45_pos_2_F07_S1027_comb
!Sample_geo_accession = GSM3198819
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446743
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy94_cd45pos_4_H09_S93_comb
!Sample_geo_accession = GSM3198820
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy53_1_CD45_pos_2_D04_S1000_comb
!Sample_geo_accession = GSM3198821
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY89A_CD45_POS_10_G06_S270_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198826
!Sample_title = cy82_CD45_pos_1_H09_S573_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446736
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^SAMPLE = GSM3198827
!Sample_title = cy53_1_CD45_pos_1_C09_S33_comb
!Sample_geo_accession = GSM3198827
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3198828
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446763
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198837
!Sample_title = CY88CD45POS_7_G07_S271_comb
!Sample_geo_accession = GSM3198837
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446762
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198838
!Sample_title = cy78_CD45_neg_2_A06_S582_comb
!Sample_geo_accession = GSM3198838
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446761
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy80_Cd45_pos_Pd1_neg_S226_B10_S226_comb
!Sample_geo_accession = GSM3198839
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446760
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy80_CD45_pos_PD1_pos_F04_S160_comb
!Sample_geo_accession = GSM3198840
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198841
!Sample_title = cy80_Cd45_pos_PD1_pos_S166_G10_S166_comb
!Sample_geo_accession = GSM3198841
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198842
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!Sample_geo_accession = GSM3198842
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198843
!Sample_title = CY58_1_CD45_F03_S1023_comb
!Sample_geo_accession = GSM3198843
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446756
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3198844
!Sample_title = CY94CD45POS_1_A02_S98_comb
!Sample_geo_accession = GSM3198844
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446755
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3198845
!Sample_title = cy53_1_CD45_pos_1_D04_S40_comb
!Sample_geo_accession = GSM3198845
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_department = Klarman Cell Observatory
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446754
!Sample_supplementary_file_1 = NONE
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!Sample_geo_accession = GSM3198846
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198847
!Sample_title = CY89FNA_D07_S235_comb
!Sample_geo_accession = GSM3198847
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD45_pos_PD1_pos_D02_S134_comb
!Sample_geo_accession = GSM3198848
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198849
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy74_CD45_pos_F01_S733_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198852
!Sample_title = cy79_p5_CD45_pos_PD1_pos_D04_S616_comb
!Sample_geo_accession = GSM3198852
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198853
!Sample_title = CY89A_CD45_POS_10_A10_S202_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446804
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198854
!Sample_title = cy80_CD45_pos_PD1_pos_C01_S121_comb
!Sample_geo_accession = GSM3198854
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446826
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198855
!Sample_title = cy82_CD45_pos_2_A12_S492_comb
!Sample_geo_accession = GSM3198855
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel82
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446803
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198856
!Sample_title = cy79_p5_CD45_pos_PD1_pos_G08_S656_comb
!Sample_geo_accession = GSM3198856
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446802
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198857
!Sample_title = CY89FNA_G02_S266_comb
!Sample_geo_accession = GSM3198857
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446801
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198858
!Sample_title = cy80_Cd45_pos_PD1_pos_S144_F12_S144_comb
!Sample_geo_accession = GSM3198858
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446800
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198859
!Sample_title = cy60_1_cd_45_pos_3_E02_S338_comb
!Sample_geo_accession = GSM3198859
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel60
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446799
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198860
!Sample_title = Cy74_CD45_G08_S464_comb
!Sample_geo_accession = GSM3198860
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446798
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198861
!Sample_title = cy79_p4_CD45_pos_PD1_pos_D06_S330_comb
!Sample_geo_accession = GSM3198861
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446825
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198862
!Sample_title = cy72_CD45_pos_B04_S880_comb
!Sample_geo_accession = GSM3198862
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel72
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3198863
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3198878
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198879
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446873
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198880
!Sample_title = cy60_1_cd_45_pos_4_D06_S42_comb
!Sample_geo_accession = GSM3198880
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel60
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446872
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198881
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_F03_S447_comb
!Sample_geo_accession = GSM3198881
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446871
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198882
!Sample_title = cy84_Primary_CD45_pos_B10_S406_comb
!Sample_geo_accession = GSM3198882
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446870
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_H01_S1045_comb
!Sample_geo_accession = GSM3198883
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446869
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198884
!Sample_title = CY88CD45POS_2_C05_S413_comb
!Sample_geo_accession = GSM3198884
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: T.CD4
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446863
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198885
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_F10_S454_comb
!Sample_geo_accession = GSM3198885
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446868
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198886
!Sample_title = CY75_1FNA_E11_S539_comb
!Sample_geo_accession = GSM3198886
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446867
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198887
!Sample_title = CY88CD45_150813_G09_S369_comb
!Sample_geo_accession = GSM3198887
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
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!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446866
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198888
!Sample_title = CY88CD45_150813_E11_S347_comb
!Sample_geo_accession = GSM3198888
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3198889
!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3198895
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198896
!Sample_title = cy58_1_CD45_pos_B05_S593_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446791
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198897
!Sample_title = cy58_1_CD45_pos_A10_S586_comb
!Sample_geo_accession = GSM3198897
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel58
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446790
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3198898
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_H10_S574_comb
!Sample_geo_accession = GSM3198898
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446789
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198899
!Sample_title = CY94CD45POS_1_F02_S158_comb
!Sample_geo_accession = GSM3198899
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198900
!Sample_title = CY89FNA_A01_S193_comb
!Sample_geo_accession = GSM3198900
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198901
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198902
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198903
!Sample_title = cy94_cd45pos_4_H04_S88_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198904
!Sample_title = cy80_CD45_neg_H07_S475_comb
!Sample_geo_accession = GSM3198904
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446783
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198905
!Sample_title = Cy81_FNA_CD45_A05_S197_comb
!Sample_geo_accession = GSM3198905
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446782
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy80_Cd45_pos_PD1_pos_S142_F10_S142_comb
!Sample_geo_accession = GSM3198906
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy74_CD45_pos_A07_S679_comb
!Sample_geo_accession = GSM3198907
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3198908
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198912
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3198914
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198921
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446645
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198923
!Sample_title = Cy74_CD45_H02_S470_comb
!Sample_geo_accession = GSM3198923
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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!Sample_title = cy79_p4_CD45_pos_PD1_pos_E01_S337_comb
!Sample_geo_accession = GSM3198924
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = CY58_1_CD45_B08_S980_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy58_1_CD45_pos_C06_S606_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198928
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy79_p4_CD45_pos_PD1_pos_F03_S351_comb
!Sample_geo_accession = GSM3198929
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446638
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!Sample_data_row_count = 0
^SAMPLE = GSM3198930
!Sample_title = Cy72_CD45_F07_S739_comb
!Sample_geo_accession = GSM3198930
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446637
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198931
!Sample_title = cy88_cd_45_pos_3_F09_S645_comb
!Sample_geo_accession = GSM3198931
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446636
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy72_CD45_pos_F04_S928_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3198933
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198938
!Sample_title = cy53_1_CD45_pos_2_F04_S1024_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198939
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
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!Sample_geo_accession = GSM3198949
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3198955
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY58_1_CD45_D06_S1002_comb
!Sample_geo_accession = GSM3198958
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3198959
!Sample_title = Cy72_CD45_D04_S712_comb
!Sample_geo_accession = GSM3198959
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_Cd45_pos_PD1_pos_D09_S93_comb
!Sample_geo_accession = GSM3198960
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198962
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198964
!Sample_title = Cy72_CD45_E04_S724_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446699
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^SAMPLE = GSM3198965
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_B05_S401_comb
!Sample_geo_accession = GSM3198965
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446698
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3198966
!Sample_title = cy58_1_CD45_pos_F01_S637_comb
!Sample_geo_accession = GSM3198966
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446697
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198967
!Sample_title = CY89A_CD45_POS_10_H04_S280_comb
!Sample_geo_accession = GSM3198967
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446696
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198968
!Sample_title = cy53_1_CD45_pos_1_E07_S55_comb
!Sample_geo_accession = GSM3198968
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198969
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!Sample_geo_accession = GSM3198969
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198970
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198971
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198972
!Sample_title = CY89COREQ1_D06_S330_comb
!Sample_geo_accession = GSM3198972
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198973
!Sample_title = Cy81_FNA_CD45_B02_S206_comb
!Sample_geo_accession = GSM3198973
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446690
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198974
!Sample_title = cy80_CD45_pos_PD1_pos_H09_S189_comb
!Sample_geo_accession = GSM3198974
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198983
!Sample_title = cy84_Primary_CD45_pos_G05_S461_comb
!Sample_geo_accession = GSM3198983
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_Cd45_pos_PD1_pos_B12_S48_comb
!Sample_geo_accession = GSM3198984
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy88_cd_45_pos_3_B09_S597_comb
!Sample_geo_accession = GSM3198985
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3198986
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3198988
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198989
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3198990
!Sample_title = cy79_p5_CD45_pos_PD1_pos_D06_S618_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446677
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3198991
!Sample_title = CY89A_CD45_POS_6_C02_S122_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_geo_accession = GSM3198992
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3199000
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = cy84_Primary_CD45_pos_E09_S441_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446659
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199009
!Sample_title = cy79_p5_CD45_pos_PD1_pos_D01_S613_comb
!Sample_geo_accession = GSM3199009
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446658
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199010
!Sample_title = CY94CD45POS_1_F01_S157_comb
!Sample_geo_accession = GSM3199010
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446657
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199011
!Sample_title = cy60_1_cd_45_pos_4_C01_S25_comb
!Sample_geo_accession = GSM3199011
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446656
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199012
!Sample_title = cy80_Cd45_pos_PD1_pos_S160_G04_S160_comb
!Sample_geo_accession = GSM3199012
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446655
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199013
!Sample_title = cy79_p4_CD45_pos_PD1_pos_F12_S360_comb
!Sample_geo_accession = GSM3199013
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199014
!Sample_title = CY89A_CD45_POS_6_E10_S154_comb
!Sample_geo_accession = GSM3199014
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199015
!Sample_title = cy80_CD45_pos_PD1_pos_C11_S131_comb
!Sample_geo_accession = GSM3199015
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199016
!Sample_title = cy60_1_cd_45_pos_3_B07_S307_comb
!Sample_geo_accession = GSM3199016
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09446557
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199017
!Sample_title = CY58_1_CD45_H11_S1055_comb
!Sample_geo_accession = GSM3199017
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_title = cy58_1_CD45_pos_F08_S644_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy82_CD45_pos_3_H10_S94_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199034
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447595
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!Sample_title = cy53_1_CD45_pos_1_D02_S38_comb
!Sample_geo_accession = GSM3199035
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199036
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199043
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447726
!Sample_supplementary_file_1 = NONE
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!Sample_title = CY58_1_CD45_C02_S986_comb
!Sample_geo_accession = GSM3199061
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3199062
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199065
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199066
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199067
!Sample_title = Cy74_CD45_G10_S466_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy84_Primary_CD45_pos_H11_S479_comb
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199069
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel74
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447717
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!Sample_title = cy80_CD45_neg_E10_S442_comb
!Sample_geo_accession = GSM3199070
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199071
!Sample_title = CY94CD45POS_1_D12_S144_comb
!Sample_geo_accession = GSM3199071
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy84_Met_CD45_pos_G01_S937_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy58_1_CD45_pos_A05_S581_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199074
!Sample_title = cy58_1_CD45_pos_E07_S631_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199075
!Sample_title = cy94_cd45neg_cd90pos_C04_S316_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447785
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^SAMPLE = GSM3199076
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_F07_S547_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447784
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^SAMPLE = GSM3199077
!Sample_title = Cy81_FNA_CD45_C03_S219_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447783
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199078
!Sample_title = CY89A_Core_15_A11_S11_comb
!Sample_geo_accession = GSM3199078
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447782
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199079
!Sample_title = cy60_1_cd_45_pos_4_D11_S47_comb
!Sample_geo_accession = GSM3199079
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447781
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199080
!Sample_title = Cy72_CD45_F03_S735_comb
!Sample_geo_accession = GSM3199080
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447780
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199081
!Sample_title = CY75_1FNA_A10_S490_comb
!Sample_geo_accession = GSM3199081
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447779
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199082
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_D02_S230_comb
!Sample_geo_accession = GSM3199082
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199083
!Sample_title = cy94_cd45pos_D02_S134_comb
!Sample_geo_accession = GSM3199083
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447777
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199084
!Sample_title = cy58_1_CD45_pos_B09_S597_comb
!Sample_geo_accession = GSM3199084
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447776
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!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199085
!Sample_title = cy79_p5_CD45_pos_PD1_pos_E06_S630_comb
!Sample_geo_accession = GSM3199085
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447775
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199086
!Sample_title = cy79_p5_CD45_pos_PD1_pos_B10_S598_comb
!Sample_geo_accession = GSM3199086
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447774
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!Sample_geo_accession = GSM3199087
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy94_cd45pos_4_A06_S6_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3199095
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199104
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!Sample_geo_accession = GSM3199104
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199110
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199111
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199112
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199113
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = CY58_1_CD45_F06_S1026_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_title = cy88_cd_45_pos_B09_S405_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199129
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3199135
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!Sample_platform_id = GPL18573
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447796
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!Sample_title = Cy72_CD45_A10_S682_comb
!Sample_geo_accession = GSM3199139
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy79_p5_CD45_pos_PD1_pos_C02_S602_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy74_CD45_pos_E08_S728_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199142
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199145
!Sample_title = CY58_1_CD45_G02_S1034_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199146
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450317
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199156
!Sample_title = cy58_1_CD45_pos_H07_S667_comb
!Sample_geo_accession = GSM3199156
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3199157
!Sample_title = cy79_p5_CD45_pos_PD1_pos_B03_S591_comb
!Sample_geo_accession = GSM3199157
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3199158
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3199159
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199161
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199162
!Sample_title = cy79_p5_CD45_pos_PD1_pos_D05_S617_comb
!Sample_geo_accession = GSM3199162
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy88_cd45pos_5_E01_S241_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_title = cy94_cd45neg_cd90pos_D06_S330_comb
!Sample_geo_accession = GSM3199167
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199173
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199190
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = CY88CD45_150813_D01_S325_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199197
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy79_p5_CD45_pos_PD1_pos_H01_S661_comb
!Sample_geo_accession = GSM3199199
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_geo_accession = GSM3199207
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450239
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199208
!Sample_title = cy60_1_cd_45_pos_3_G03_S363_comb
!Sample_geo_accession = GSM3199208
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel60
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450238
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199209
!Sample_title = CY58_1_CD45_C07_S991_comb
!Sample_geo_accession = GSM3199209
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel58
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450237
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199210
!Sample_title = cy74_CD45_pos_H05_S761_comb
!Sample_geo_accession = GSM3199210
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450236
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199211
!Sample_title = CY58_1_CD45_G01_S1033_comb
!Sample_geo_accession = GSM3199211
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel58
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450232
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199212
!Sample_title = cy80_Cd45_pos_PD1_pos_S167_G11_S167_comb
!Sample_geo_accession = GSM3199212
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450231
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199213
!Sample_title = Cy81_FNA_CD45_G06_S270_comb
!Sample_geo_accession = GSM3199213
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450230
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199214
!Sample_title = Cy81_FNA_CD45_A11_S203_comb
!Sample_geo_accession = GSM3199214
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel81
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450229
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199215
!Sample_title = Cy71_CD45_H09_S573_comb
!Sample_geo_accession = GSM3199215
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450235
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199216
!Sample_title = Cy72_CD45_G10_S754_comb
!Sample_geo_accession = GSM3199216
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450234
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199217
!Sample_title = CY88CD45_150813_C09_S321_comb
!Sample_geo_accession = GSM3199217
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450233
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199218
!Sample_title = cy79_p4_CD45_pos_PD1_pos_A07_S295_comb
!Sample_geo_accession = GSM3199218
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450228
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199219
!Sample_title = cy58_1_CD45_pos_E01_S625_comb
!Sample_geo_accession = GSM3199219
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199220
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!Sample_geo_accession = GSM3199220
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199222
!Sample_title = cy79_p4_CD45_pos_PD1_pos_H12_S384_comb
!Sample_geo_accession = GSM3199222
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199223
!Sample_title = cy94_cd45pos_4_H07_S91_comb
!Sample_geo_accession = GSM3199223
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450223
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199224
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_D12_S528_comb
!Sample_geo_accession = GSM3199224
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_contact_country = USA
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!Sample_supplementary_file_1 = NONE
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!Sample_geo_accession = GSM3199233
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p5_CD45_pos_PD1_pos_A11_S587_comb
!Sample_geo_accession = GSM3199234
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450245
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199242
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_C02_S506_comb
!Sample_geo_accession = GSM3199242
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy80_CD45_neg_B12_S408_comb
!Sample_geo_accession = GSM3199243
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199244
!Sample_title = cy79_p4_CD45_pos_PD1_pos_H02_S374_comb
!Sample_geo_accession = GSM3199244
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199245
!Sample_title = cy53_1_CD45_pos_1_G04_S76_comb
!Sample_geo_accession = GSM3199245
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199246
!Sample_title = cy58_1_CD45_pos_C02_S602_comb
!Sample_geo_accession = GSM3199246
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199247
!Sample_title = cy80_Cd45_pos_PD1_pos_D06_S90_comb
!Sample_geo_accession = GSM3199247
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450313
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3199248
!Sample_title = cy72_CD45_pos_E11_S923_comb
!Sample_geo_accession = GSM3199248
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199249
!Sample_title = cy74_CD45_pos_C01_S697_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450311
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199250
!Sample_title = cy82_CD45_pos_1_C04_S508_comb
!Sample_geo_accession = GSM3199250
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy94_cd45pos_A12_S108_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = Cy72_CD45_E03_S723_comb
!Sample_geo_accession = GSM3199253
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy84_Primary_CD45_pos_A01_S385_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy58_1_CD45_pos_G07_S655_comb
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199256
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199257
!Sample_title = Cy74_CD45_D09_S429_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199258
!Sample_title = cy88_cd45pos_5_B03_S207_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450302
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199259
!Sample_title = Cy72_CD45_H09_S765_comb
!Sample_geo_accession = GSM3199259
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel72
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450301
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199260
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_E08_S536_comb
!Sample_geo_accession = GSM3199260
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450300
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^SAMPLE = GSM3199261
!Sample_title = cy58_1_CD45_pos_F07_S643_comb
!Sample_geo_accession = GSM3199261
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450299
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199262
!Sample_title = cy74_CD45_pos_F09_S741_comb
!Sample_geo_accession = GSM3199262
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199263
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199264
!Sample_title = cy82_CD45_pos_2_D04_S520_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199265
!Sample_title = cy79_p5_CD45_pos_PD1_pos_B02_S590_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450295
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!Sample_data_row_count = 0
^SAMPLE = GSM3199266
!Sample_title = Cy72_CD45_G07_S751_comb
!Sample_geo_accession = GSM3199266
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450294
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199267
!Sample_title = cy88_cd_45_pos_3_C07_S607_comb
!Sample_geo_accession = GSM3199267
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
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^SAMPLE = GSM3199268
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!Sample_geo_accession = GSM3199268
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD45_neg_C07_S415_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199273
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3199275
!Sample_title = cy58_1_CD45_pos_C10_S610_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199284
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450348
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199285
!Sample_title = CY88CD45POS_2_E05_S437_comb
!Sample_geo_accession = GSM3199285
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199286
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!Sample_geo_accession = GSM3199286
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450058
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^SAMPLE = GSM3199287
!Sample_title = cy53_1_CD45_pos_1_G03_S75_comb
!Sample_geo_accession = GSM3199287
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3199288
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199289
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199290
!Sample_title = cy72_CD45_pos_F05_S929_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199291
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!Sample_geo_accession = GSM3199291
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199292
!Sample_title = cy53_1_CD45_pos_1_B12_S24_comb
!Sample_geo_accession = GSM3199292
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450052
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199293
!Sample_title = cy79_p5_CD45_pos_PD1_pos_D10_S622_comb
!Sample_geo_accession = GSM3199293
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450043
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199302
!Sample_title = cy79_p4_CD45_pos_PD1_pos_C02_S314_comb
!Sample_geo_accession = GSM3199302
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450042
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199303
!Sample_title = CY94CD45POS_1_D10_S142_comb
!Sample_geo_accession = GSM3199303
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450041
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199304
!Sample_title = cy80_CD45_pos_PD1_pos_B01_S109_comb
!Sample_geo_accession = GSM3199304
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450114
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199305
!Sample_title = cy60_1_cd_45_pos_4_A09_S9_comb
!Sample_geo_accession = GSM3199305
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450113
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199306
!Sample_title = cy80_Cd45_pos_PD1_pos_S114_E06_S114_comb
!Sample_geo_accession = GSM3199306
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199307
!Sample_title = cy80_CD45_neg_F05_S449_comb
!Sample_geo_accession = GSM3199307
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450111
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3199308
!Sample_title = cy60_1_cd_45_pos_4_D09_S45_comb
!Sample_geo_accession = GSM3199308
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3199309
!Sample_title = cy82_CD45_pos_2_B10_S502_comb
!Sample_geo_accession = GSM3199309
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel82
!Sample_characteristics_ch1 = treatment-group: treatment.naive
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!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450109
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199310
!Sample_title = cy88_cd_45_pos_E09_S441_comb
!Sample_geo_accession = GSM3199310
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY58_1_CD45_G07_S1039_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450005
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199328
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_B10_S214_comb
!Sample_geo_accession = GSM3199328
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_D08_S428_comb
!Sample_geo_accession = GSM3199329
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = CY89A_CD45_POS_10_E12_S252_comb
!Sample_geo_accession = GSM3199330
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3199331
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!Sample_geo_accession = GSM3199331
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199333
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199335
!Sample_title = cy94_cd45pos_4_H08_S92_comb
!Sample_geo_accession = GSM3199335
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450071
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199336
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!Sample_geo_accession = GSM3199336
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = Cy81_FNA_CD45_D06_S234_comb
!Sample_geo_accession = GSM3199337
!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy79_p5_CD45_pos_PD1_pos_D08_S620_comb
!Sample_geo_accession = GSM3199338
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy84_Primary_CD45_pos_G12_S468_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199342
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199343
!Sample_title = cy79_p4_CD45_pos_PD1_pos_D07_S331_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199344
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450060
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199345
!Sample_title = cy79_p5_CD45_pos_PD1_pos_E07_S631_comb
!Sample_geo_accession = GSM3199345
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450160
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199346
!Sample_title = cy80_Cd45_pos_PD1_pos_S117_E09_S117_comb
!Sample_geo_accession = GSM3199346
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450159
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199347
!Sample_title = cy58_1_CD45_pos_A12_S588_comb
!Sample_geo_accession = GSM3199347
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450158
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199348
!Sample_title = Cy71_CD45_D10_S526_comb
!Sample_geo_accession = GSM3199348
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450157
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199349
!Sample_title = cy53_1_CD45_pos_1_C11_S35_comb
!Sample_geo_accession = GSM3199349
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450156
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199350
!Sample_title = cy79_p4_CD45_pos_PD1_pos_E02_S338_comb
!Sample_geo_accession = GSM3199350
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450155
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199351
!Sample_title = cy60_1_cd_45_pos_3_F06_S354_comb
!Sample_geo_accession = GSM3199351
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450154
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199352
!Sample_title = cy94_cd45pos_B08_S116_comb
!Sample_geo_accession = GSM3199352
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450153
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199353
!Sample_title = cy79_p5_CD45_pos_PD1_pos_D11_S623_comb
!Sample_geo_accession = GSM3199353
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_title = cy79_p4_CD45_pos_PD1_pos_D05_S329_comb
!Sample_geo_accession = GSM3199354
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199359
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199360
!Sample_title = cy80_Cd45_pos_PD1_pos_C04_S64_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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^SAMPLE = GSM3199361
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450031
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199371
!Sample_title = cy80_CD45_pos_PD1_pos_E12_S156_comb
!Sample_geo_accession = GSM3199371
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450030
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199372
!Sample_title = cy79_p5_CD45_pos_PD1_pos_H11_S671_comb
!Sample_geo_accession = GSM3199372
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450029
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199373
!Sample_title = cy80_Cd45_pos_PD1_pos_C05_S65_comb
!Sample_geo_accession = GSM3199373
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450028
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199374
!Sample_title = Cy74_CD45_H09_S477_comb
!Sample_geo_accession = GSM3199374
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450027
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199375
!Sample_title = cy60_1_cd_45_pos_3_C11_S323_comb
!Sample_geo_accession = GSM3199375
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450026
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199376
!Sample_title = cy60_1_cd_45_pos_3_F02_S350_comb
!Sample_geo_accession = GSM3199376
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450025
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199377
!Sample_title = CY58_1_CD45_C10_S994_comb
!Sample_geo_accession = GSM3199377
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450024
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199378
!Sample_title = CY58_1_CD45_G04_S1036_comb
!Sample_geo_accession = GSM3199378
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel58
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450023
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199379
!Sample_title = cy72_CD45_pos_C09_S897_comb
!Sample_geo_accession = GSM3199379
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3199422
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449805
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199423
!Sample_title = cy94_cd45pos_4_E06_S54_comb
!Sample_geo_accession = GSM3199423
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199424
!Sample_title = CY88CD45POS_2_F03_S447_comb
!Sample_geo_accession = GSM3199424
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = Cy74_CD45_D02_S422_comb
!Sample_geo_accession = GSM3199425
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
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!Sample_title = cy84_Primary_CD45_pos_B12_S408_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199428
!Sample_title = cy79_p4_CD45_pos_PD1_pos_H05_S377_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199429
!Sample_title = cy80_Cd45_pos_PD1_pos_S113_E05_S113_comb
!Sample_geo_accession = GSM3199429
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199430
!Sample_title = cy79_p5_CD45_pos_PD1_pos_H12_S672_comb
!Sample_geo_accession = GSM3199430
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449798
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199431
!Sample_title = cy74_CD45_pos_F08_S740_comb
!Sample_geo_accession = GSM3199431
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449797
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199432
!Sample_title = cy94_cd45neg_cd90pos_B02_S302_comb
!Sample_geo_accession = GSM3199432
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199433
!Sample_title = cy94_cd45pos_D09_S141_comb
!Sample_geo_accession = GSM3199433
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy53_1_CD45_pos_2_H02_S1046_comb
!Sample_geo_accession = GSM3199434
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy94_cd45pos_4_H10_S94_comb
!Sample_geo_accession = GSM3199435
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199436
!Sample_title = CY75_1FNA_A05_S485_comb_6
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199437
!Sample_title = Cy81_FNA_CD45_B05_S209_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449924
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^SAMPLE = GSM3199438
!Sample_title = cy74_CD45_pos_C06_S702_comb
!Sample_geo_accession = GSM3199438
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449923
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199439
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_C03_S219_comb
!Sample_geo_accession = GSM3199439
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449922
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199440
!Sample_title = CY88CD45POS_2_C09_S417_comb
!Sample_geo_accession = GSM3199440
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449921
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199441
!Sample_title = cy72_CD45_pos_B12_S888_comb
!Sample_geo_accession = GSM3199441
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449920
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199442
!Sample_title = cy79_p4_CD45_pos_PD1_pos_B12_S312_comb
!Sample_geo_accession = GSM3199442
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449919
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^SAMPLE = GSM3199443
!Sample_title = cy74_CD45_pos_B07_S691_comb
!Sample_geo_accession = GSM3199443
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449918
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199444
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!Sample_geo_accession = GSM3199444
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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^SAMPLE = GSM3199445
!Sample_title = cy58_1_CD45_pos_F05_S641_comb
!Sample_geo_accession = GSM3199445
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450003
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199446
!Sample_title = cy80_Cd45_pos_PD1_pos_B04_S40_comb
!Sample_geo_accession = GSM3199446
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450002
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199447
!Sample_title = Cy72_CD45_G02_S746_comb
!Sample_geo_accession = GSM3199447
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450001
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199448
!Sample_title = CY88CD45POS_7_C09_S225_comb
!Sample_geo_accession = GSM3199448
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199457
!Sample_title = cy72_CD45_pos_H03_S951_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199458
!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449983
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199466
!Sample_title = cy80_Cd45_pos_PD1_pos_D07_S91_comb
!Sample_geo_accession = GSM3199466
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449982
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199467
!Sample_title = cy79_p4_CD45_pos_PD1_pos_B08_S308_comb
!Sample_geo_accession = GSM3199467
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY89A_CD45_POS_10_G11_S275_comb
!Sample_geo_accession = GSM3199468
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199471
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_row_count = 0
^SAMPLE = GSM3199472
!Sample_title = cy94_cd45pos_4_D10_S46_comb
!Sample_geo_accession = GSM3199472
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199473
!Sample_title = cy94_cd45pos_4_D09_S45_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449975
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199474
!Sample_title = cy72_CD45_pos_G12_S948_comb
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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^SAMPLE = GSM3199481
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199482
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449611
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199483
!Sample_title = CY89A_Core_15_B11_S23_comb
!Sample_geo_accession = GSM3199483
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449610
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199484
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_B05_S209_comb
!Sample_geo_accession = GSM3199484
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449609
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199485
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!Sample_geo_accession = GSM3199485
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199486
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!Sample_geo_accession = GSM3199486
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449608
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199487
!Sample_title = cy72_CD45_pos_D06_S906_comb
!Sample_geo_accession = GSM3199487
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199488
!Sample_title = cy53_1_CD45_pos_2_B02_S974_comb
!Sample_geo_accession = GSM3199488
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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^SAMPLE = GSM3199489
!Sample_title = cy79_p5_CD45_pos_PD1_pos_E05_S629_comb
!Sample_geo_accession = GSM3199489
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449605
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199490
!Sample_title = cy94_cd45pos_F10_S166_comb
!Sample_geo_accession = GSM3199490
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449604
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199491
!Sample_title = Cy74_CD45_C01_S409_comb
!Sample_geo_accession = GSM3199491
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449760
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199509
!Sample_title = cy53_1_CD45_pos_1_H10_S94_comb
!Sample_geo_accession = GSM3199509
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449759
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199510
!Sample_title = cy74_CD45_pos_F10_S742_comb
!Sample_geo_accession = GSM3199510
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449758
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199511
!Sample_title = Cy74_CD45_D06_S426_comb
!Sample_geo_accession = GSM3199511
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449755
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199512
!Sample_title = CY94CD45POS_1_B04_S112_comb
!Sample_geo_accession = GSM3199512
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449754
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199513
!Sample_title = cy79_p3_CD45_pos_PD1_neg_E06_S150_comb
!Sample_geo_accession = GSM3199513
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449753
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199514
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_E09_S441_comb
!Sample_geo_accession = GSM3199514
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449752
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199515
!Sample_title = Cy72_CD45_C05_S701_comb
!Sample_geo_accession = GSM3199515
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449757
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199516
!Sample_title = cy80_CD45_pos_PD1_pos_D04_S136_comb
!Sample_geo_accession = GSM3199516
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel80
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449756
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3199517
!Sample_title = CY89A_CD45_POS_6_E04_S148_comb
!Sample_geo_accession = GSM3199517
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449751
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199518
!Sample_title = cy74_CD45_pos_G05_S749_comb
!Sample_geo_accession = GSM3199518
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449750
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199519
!Sample_title = cy58_1_CD45_pos_A06_S582_comb
!Sample_geo_accession = GSM3199519
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel58
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449749
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199520
!Sample_title = cy79_p5_CD45_pos_PD1_pos_B06_S594_comb
!Sample_geo_accession = GSM3199520
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449748
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199521
!Sample_title = cy79_p4_CD45_pos_PD1_pos_E10_S346_comb
!Sample_geo_accession = GSM3199521
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449747
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199522
!Sample_title = CY75_1FNA_A12_S492_comb
!Sample_geo_accession = GSM3199522
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449746
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199523
!Sample_title = cy84_Primary_CD45_pos_H03_S471_comb
!Sample_geo_accession = GSM3199523
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449745
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199524
!Sample_title = Cy74_CD45_C04_S412_comb
!Sample_geo_accession = GSM3199524
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449744
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199525
!Sample_title = cy94_cd45pos_H06_S186_comb
!Sample_geo_accession = GSM3199525
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449743
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199526
!Sample_title = cy60_1_cd_45_pos_3_G11_S371_comb
!Sample_geo_accession = GSM3199526
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449742
!Sample_supplementary_file_1 = NONE
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!Sample_title = CY89A_CD45_POS_6_G05_S173_comb
!Sample_geo_accession = GSM3199527
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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!Sample_title = cy82_CD45_pos_2_A02_S482_comb
!Sample_geo_accession = GSM3199528
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
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!Sample_title = CY88CD45_150813_H11_S383_comb
!Sample_geo_accession = GSM3199529
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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^SAMPLE = GSM3199530
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199531
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449737
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199532
!Sample_title = CY58_1_CD45_F07_S1027_comb
!Sample_geo_accession = GSM3199532
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449736
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199533
!Sample_title = cy79_p5_CD45_pos_PD1_pos_F11_S647_comb
!Sample_geo_accession = GSM3199533
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449735
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199534
!Sample_title = cy58_1_CD45_pos_C03_S603_comb
!Sample_geo_accession = GSM3199534
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449695
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199552
!Sample_title = CY89COREQ1_E12_S348_comb
!Sample_geo_accession = GSM3199552
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449694
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199553
!Sample_title = cy53_1_CD45_pos_1_G05_S77_comb
!Sample_geo_accession = GSM3199553
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199554
!Sample_title = cy79_p4_CD45_pos_PD1_pos_G09_S369_comb
!Sample_geo_accession = GSM3199554
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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^SAMPLE = GSM3199555
!Sample_title = cy72_CD45_pos_B05_S881_comb
!Sample_geo_accession = GSM3199555
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199556
!Sample_title = CY94CD45POS_1_B03_S111_comb
!Sample_geo_accession = GSM3199556
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199557
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_D06_S234_comb
!Sample_geo_accession = GSM3199557
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449689
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199558
!Sample_title = cy80_Cd45_pos_Pd1_neg_S217_B01_S217_comb
!Sample_geo_accession = GSM3199558
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199559
!Sample_title = cy79_p4_CD45_pos_PD1_pos_B02_S302_comb
!Sample_geo_accession = GSM3199559
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449687
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199560
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy58_1_CD45_pos_G08_S656_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy58_1_CD45_pos_G12_S660_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy88_cd_45_pos_3_B11_S599_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199567
!Sample_title = cy88_cd_45_pos_G11_S467_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_geo_accession = GSM3199568
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449730
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199569
!Sample_title = CY75_1FNA_H03_S567_comb
!Sample_geo_accession = GSM3199569
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449729
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199570
!Sample_title = cy80_CD45_pos_PD1_pos_D03_S135_comb
!Sample_geo_accession = GSM3199570
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449727
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199571
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!Sample_geo_accession = GSM3199571
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449726
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199572
!Sample_title = cy60_1_cd_45_pos_4_B09_S21_comb
!Sample_geo_accession = GSM3199572
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199573
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!Sample_geo_accession = GSM3199573
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199574
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!Sample_geo_accession = GSM3199574
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cell type: T.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449575
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199575
!Sample_title = cy84_Met_CD45_pos_A04_S868_comb
!Sample_geo_accession = GSM3199575
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449574
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199576
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_C09_S417_comb
!Sample_geo_accession = GSM3199576
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449573
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199577
!Sample_title = CY89A_CD45_POS_10_E11_S251_comb
!Sample_geo_accession = GSM3199577
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449572
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199578
!Sample_title = cy80_Cd45_pos_Pd1_neg_S344_G08_S344_comb
!Sample_geo_accession = GSM3199578
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199579
!Sample_title = CY88CD45_150813_B05_S305_comb_7
!Sample_geo_accession = GSM3199579
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy79_p4_CD45_pos_PD1_pos_G10_S370_comb
!Sample_geo_accession = GSM3199580
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy84_Primary_CD45_pos_D09_S429_comb
!Sample_geo_accession = GSM3199581
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199582
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199583
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!Sample_geo_accession = GSM3199583
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449566
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^SAMPLE = GSM3199584
!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_D12_S1008_comb
!Sample_geo_accession = GSM3199584
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449565
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199585
!Sample_title = cy88_cd_45_pos_3_H08_S668_comb
!Sample_geo_accession = GSM3199585
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199595
!Sample_title = cy94_cd45pos_C05_S125_comb
!Sample_geo_accession = GSM3199595
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199597
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy82_CD45_pos_1_B09_S501_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3199603
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!Sample_geo_accession = GSM3199603
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449724
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_F11_S263_comb
!Sample_geo_accession = GSM3199604
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449792
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199605
!Sample_title = cy80_Cd45_pos_PD1_pos_C09_S69_comb
!Sample_geo_accession = GSM3199605
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449723
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^SAMPLE = GSM3199606
!Sample_title = CY89COREQ1_D07_S331_comb
!Sample_geo_accession = GSM3199606
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449796
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199607
!Sample_title = cy80_Cd45_pos_PD1_pos_A12_S24_comb
!Sample_geo_accession = GSM3199607
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3199608
!Sample_title = Cy74_CD45_F06_S450_comb
!Sample_geo_accession = GSM3199608
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449794
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^SAMPLE = GSM3199609
!Sample_title = CY88CD45POS_2_F11_S455_comb
!Sample_geo_accession = GSM3199609
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449793
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199610
!Sample_title = cy58_1_CD45_pos_A03_S579_comb
!Sample_geo_accession = GSM3199610
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449791
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199611
!Sample_title = cy58_1_CD45_pos_D09_S621_comb
!Sample_geo_accession = GSM3199611
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449790
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199612
!Sample_title = Cy71_CD45_G07_S559_comb
!Sample_geo_accession = GSM3199612
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449789
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199613
!Sample_title = cy80_Cd45_pos_Pd1_neg_S242_C02_S242_comb
!Sample_geo_accession = GSM3199613
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449788
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!Sample_title = cy88_cd_45_pos_3_B03_S591_comb
!Sample_geo_accession = GSM3199614
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449787
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!Sample_title = cy58_1_CD45_pos_B06_S594_comb
!Sample_geo_accession = GSM3199615
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449786
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199616
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!Sample_geo_accession = GSM3199616
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199617
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449784
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!Sample_title = cy82_CD45_pos_2_F01_S541_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449783
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199619
!Sample_title = cy94_cd45pos_4_B07_S19_comb
!Sample_geo_accession = GSM3199619
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449782
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199620
!Sample_title = cy84_Primary_CD45_pos_D03_S423_comb
!Sample_geo_accession = GSM3199620
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_platform_id = GPL18573
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449229
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^SAMPLE = GSM3199629
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_F08_S260_comb
!Sample_geo_accession = GSM3199629
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449228
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^SAMPLE = GSM3199630
!Sample_title = cy94_cd45pos_C02_S122_comb
!Sample_geo_accession = GSM3199630
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = CY94CD45POS_1_C08_S128_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3199636
!Sample_title = cy74_CD45_pos_F04_S736_comb
!Sample_geo_accession = GSM3199636
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199637
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!Sample_geo_accession = GSM3199637
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449211
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199647
!Sample_title = CY94CD45POS_1_C09_S129_comb
!Sample_geo_accession = GSM3199647
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449210
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199648
!Sample_title = cy80_CD45_pos_PD1_pos_B06_S114_comb
!Sample_geo_accession = GSM3199648
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel80
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449281
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199649
!Sample_title = cy53_1_CD45_pos_1_H01_S85_comb
!Sample_geo_accession = GSM3199649
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449280
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199650
!Sample_title = cy74_CD45_pos_D08_S716_comb
!Sample_geo_accession = GSM3199650
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449279
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199651
!Sample_title = CY88CD45POS_7_B05_S209_comb
!Sample_geo_accession = GSM3199651
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449278
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199652
!Sample_title = CY88CD45_150813_H10_S382_comb
!Sample_geo_accession = GSM3199652
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449277
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199653
!Sample_title = cy74_CD45_pos_A02_S674_comb
!Sample_geo_accession = GSM3199653
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449276
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199654
!Sample_title = Cy74_CD45_C09_S417_comb
!Sample_geo_accession = GSM3199654
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449275
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199655
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_G10_S274_comb
!Sample_geo_accession = GSM3199655
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449274
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199656
!Sample_title = CY88CD45POS_2_F05_S449_comb
!Sample_geo_accession = GSM3199656
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449273
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199657
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_C12_S228_comb
!Sample_geo_accession = GSM3199657
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449272
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199658
!Sample_title = CY89A_CD45_POS_6_C09_S129_comb
!Sample_geo_accession = GSM3199658
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449271
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199659
!Sample_title = cy72_CD45_pos_E12_S924_comb
!Sample_geo_accession = GSM3199659
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449270
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199660
!Sample_title = CY75_1FNA_G01_S553_comb
!Sample_geo_accession = GSM3199660
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449269
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199661
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_E06_S438_comb
!Sample_geo_accession = GSM3199661
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449268
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199662
!Sample_title = cy80_Cd45_pos_PD1_pos_C03_S63_comb
!Sample_geo_accession = GSM3199662
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel80
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449265
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199663
!Sample_title = cy58_1_CD45_pos_G05_S653_comb
!Sample_geo_accession = GSM3199663
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3199686
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^SAMPLE = GSM3199689
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3199696
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449240
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199707
!Sample_title = cy88_cd_45_pos_B01_S397_comb
!Sample_geo_accession = GSM3199707
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449239
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199708
!Sample_title = cy79_p4_CD45_pos_PD1_pos_B05_S305_comb
!Sample_geo_accession = GSM3199708
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449238
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199709
!Sample_title = cy80_CD45_pos_PD1_pos_H05_S185_comb
!Sample_geo_accession = GSM3199709
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449237
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199710
!Sample_title = CY88CD45POS_7_B07_S211_comb
!Sample_geo_accession = GSM3199710
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449236
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199711
!Sample_title = cy80_CD45_pos_PD1_pos_F09_S165_comb
!Sample_geo_accession = GSM3199711
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199712
!Sample_title = Cy72_CD45_E05_S725_comb
!Sample_geo_accession = GSM3199712
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: T.CD4
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449234
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199713
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_B11_S407_comb
!Sample_geo_accession = GSM3199713
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449071
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^SAMPLE = GSM3199714
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_C05_S221_comb
!Sample_geo_accession = GSM3199714
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_title = cy72_CD45_pos_A09_S873_comb
!Sample_geo_accession = GSM3199716
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_Cd45_pos_PD1_pos_D10_S94_comb
!Sample_geo_accession = GSM3199717
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_D09_S237_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199719
!Sample_title = CY89FNA_E01_S241_comb
!Sample_geo_accession = GSM3199719
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3199720
!Sample_title = cy80_CD45_pos_PD1_pos_A07_S103_comb
!Sample_geo_accession = GSM3199720
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_geo_accession = GSM3199721
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199723
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449138
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199724
!Sample_title = cy84_Primary_CD45_pos_D06_S426_comb
!Sample_geo_accession = GSM3199724
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449132
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199725
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_C03_S411_comb
!Sample_geo_accession = GSM3199725
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449137
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199726
!Sample_title = CY88CD45_150813_E08_S344_comb
!Sample_geo_accession = GSM3199726
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449136
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199727
!Sample_title = cy94_cd45pos_H11_S191_comb
!Sample_geo_accession = GSM3199727
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449135
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199728
!Sample_title = cy80_CD45_pos_PD1_pos_F10_S166_comb
!Sample_geo_accession = GSM3199728
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449134
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199729
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_F11_S551_comb
!Sample_geo_accession = GSM3199729
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449133
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199730
!Sample_title = CY89A_CD45_POS_10_E04_S244_comb
!Sample_geo_accession = GSM3199730
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449131
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199731
!Sample_title = CY75_1FNA_G04_S556_comb
!Sample_geo_accession = GSM3199731
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449130
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199732
!Sample_title = Cy74_CD45_B10_S406_comb
!Sample_geo_accession = GSM3199732
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_contact_zip/postal_code = 02142
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^SAMPLE = GSM3199741
!Sample_title = Cy72_CD45_C09_S705_comb
!Sample_geo_accession = GSM3199741
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199742
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = CY88CD45_150813_B07_S307_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199748
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199749
!Sample_title = cy80_Cd45_pos_PD1_pos_S112_E04_S112_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3199750
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449175
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199759
!Sample_title = cy60_1_cd_45_pos_3_C01_S313_comb
!Sample_geo_accession = GSM3199759
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449174
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^SAMPLE = GSM3199760
!Sample_title = Cy71_CD45_E04_S532_comb
!Sample_geo_accession = GSM3199760
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy94_cd45pos_H12_S192_comb
!Sample_geo_accession = GSM3199761
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy80_CD45_pos_PD1_pos_A05_S101_comb
!Sample_geo_accession = GSM3199762
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199764
!Sample_title = cy74_CD45_pos_B01_S685_comb
!Sample_geo_accession = GSM3199764
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449168
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^SAMPLE = GSM3199765
!Sample_title = cy84_Met_CD45_pos_B08_S884_comb
!Sample_geo_accession = GSM3199765
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199766
!Sample_title = Cy72_CD45_F09_S741_comb
!Sample_geo_accession = GSM3199766
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449166
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199767
!Sample_title = CY89A_CD45_POS_10_E07_S247_comb
!Sample_geo_accession = GSM3199767
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449165
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199768
!Sample_title = cy94_cd45pos_H02_S182_comb
!Sample_geo_accession = GSM3199768
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199769
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!Sample_geo_accession = GSM3199769
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449163
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^SAMPLE = GSM3199770
!Sample_title = cy80_Cd45_pos_PD1_pos_S133_F01_S133_comb
!Sample_geo_accession = GSM3199770
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199771
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199772
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199773
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199774
!Sample_title = cy80_Cd45_pos_Pd1_neg_S362_H02_S362_comb
!Sample_geo_accession = GSM3199774
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447953
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199775
!Sample_title = cy74_CD45_pos_G06_S750_comb
!Sample_geo_accession = GSM3199775
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199776
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!Sample_geo_accession = GSM3199776
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199792
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447934
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199793
!Sample_title = cy79_p4_CD45_pos_PD1_pos_G01_S361_comb
!Sample_geo_accession = GSM3199793
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3199794
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199795
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199802
!Sample_title = cy80_CD45_neg_D05_S425_comb
!Sample_geo_accession = GSM3199802
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199803
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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^SAMPLE = GSM3199809
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449209
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199819
!Sample_title = Cy74_CD45_B04_S400_comb
!Sample_geo_accession = GSM3199819
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449207
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199820
!Sample_title = cy94_cd45pos_B05_S113_comb
!Sample_geo_accession = GSM3199820
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449206
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199821
!Sample_title = cy80_CD45_neg_E07_S439_comb
!Sample_geo_accession = GSM3199821
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449205
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199822
!Sample_title = Cy72_CD45_H11_S767_comb
!Sample_geo_accession = GSM3199822
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449204
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199823
!Sample_title = cy80_Cd45_pos_PD1_pos_S188_H08_S188_comb
!Sample_geo_accession = GSM3199823
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449203
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199824
!Sample_title = cy60_1_cd_45_pos_4_B07_S19_comb
!Sample_geo_accession = GSM3199824
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449202
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3199825
!Sample_title = CY89A_CD45_POS_10_F12_S264_comb
!Sample_geo_accession = GSM3199825
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449201
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3199826
!Sample_title = cy79_p4_CD45_pos_PD1_pos_E12_S348_comb
!Sample_geo_accession = GSM3199826
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449200
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3199827
!Sample_title = cy80_CD45_pos_PD1_pos_A11_S107_comb
!Sample_geo_accession = GSM3199827
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449199
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199828
!Sample_title = cy80_Cd45_pos_PD1_pos_A04_S16_comb
!Sample_geo_accession = GSM3199828
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449198
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199829
!Sample_title = CY89FNA_G07_S271_comb
!Sample_geo_accession = GSM3199829
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449197
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199830
!Sample_title = cy79_p1_CD45_pos_PD1_pos_AS_C5_R1_H04_S280_comb
!Sample_geo_accession = GSM3199830
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449196
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199831
!Sample_title = cy53_1_CD45_pos_2_A08_S968_comb
!Sample_geo_accession = GSM3199831
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449195
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199832
!Sample_title = cy80_Cd45_pos_PD1_pos_S168_G12_S168_comb
!Sample_geo_accession = GSM3199832
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449194
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199833
!Sample_title = Cy74_CD45_E11_S443_comb
!Sample_geo_accession = GSM3199833
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448892
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199834
!Sample_title = Cy74_CD45_H04_S472_comb
!Sample_geo_accession = GSM3199834
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448891
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199835
!Sample_title = cy60_1_cd_45_pos_4_G10_S82_comb
!Sample_geo_accession = GSM3199835
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel60
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448890
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199836
!Sample_title = cy53_1_CD45_pos_2_C08_S992_comb
!Sample_geo_accession = GSM3199836
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448889
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199837
!Sample_title = cy53_1_CD45_pos_2_H04_S1048_comb
!Sample_geo_accession = GSM3199837
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_title = CY88CD45_150813_H01_S373_comb
!Sample_geo_accession = GSM3199838
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_geo_accession = GSM3199839
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199841
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448884
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^SAMPLE = GSM3199842
!Sample_title = CY94CD45POS_1_H07_S187_comb
!Sample_geo_accession = GSM3199842
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199843
!Sample_title = CY89A_CD45_POS_6_C05_S125_comb
!Sample_geo_accession = GSM3199843
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448878
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199844
!Sample_title = cy79_p3_CD45_pos_PD1_pos_AS_C2_R1_H10_S478_comb
!Sample_geo_accession = GSM3199844
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_title = CY89A_CD45_POS_10_C11_S227_comb
!Sample_geo_accession = GSM3199862
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_geo_accession = GSM3199864
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3199867
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3199868
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199869
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199870
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448970
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199871
!Sample_title = CY89NEG_C11_S35_comb
!Sample_geo_accession = GSM3199871
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448969
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199872
!Sample_title = cy84_Primary_CD45_pos_E03_S435_comb
!Sample_geo_accession = GSM3199872
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448968
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199873
!Sample_title = cy84_Met_CD45_pos_B03_S879_comb
!Sample_geo_accession = GSM3199873
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448967
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3199874
!Sample_title = CY84_PRIM_POS_ALL_7_C02_S218_comb
!Sample_geo_accession = GSM3199874
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448966
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199875
!Sample_title = cy80_Cd45_pos_Pd1_neg_S366_H06_S366_comb
!Sample_geo_accession = GSM3199875
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448965
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199876
!Sample_title = CY88CD45POS_2_G05_S461_comb
!Sample_geo_accession = GSM3199876
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448964
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199877
!Sample_title = cy84_Met_CD45_pos_A09_S873_comb
!Sample_geo_accession = GSM3199877
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448963
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199878
!Sample_title = CY88CD45_150813_C03_S315_comb
!Sample_geo_accession = GSM3199878
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448962
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199879
!Sample_title = cy53_1_CD45_pos_2_H06_S1050_comb
!Sample_geo_accession = GSM3199879
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448961
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199880
!Sample_title = cy94_cd45neg_cd90pos_E11_S347_comb
!Sample_geo_accession = GSM3199880
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_CD_90_pos_A04_S868_comb
!Sample_geo_accession = GSM3199881
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3199882
!Sample_title = cy80_CD_90_pos_F08_S932_comb
!Sample_geo_accession = GSM3199882
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199883
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3199884
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199885
!Sample_title = cy80_CD45_neg_G11_S947_comb
!Sample_geo_accession = GSM3199885
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199886
!Sample_title = CY89A_Core_15_G04_S76_comb
!Sample_geo_accession = GSM3199886
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448954
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199887
!Sample_title = CY89A_CD45_POS_10_E10_S250_comb
!Sample_geo_accession = GSM3199887
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3199888
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy88_cd45pos_5_F03_S255_comb
!Sample_geo_accession = GSM3199889
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199890
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3199893
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = Cy81_FNA_CD45_C12_S228_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448936
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199905
!Sample_title = cy53_1_CD45_pos_2_A04_S964_comb
!Sample_geo_accession = GSM3199905
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448935
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!Sample_title = cy94_cd45neg_cd90pos_E02_S338_comb
!Sample_geo_accession = GSM3199906
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448934
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^SAMPLE = GSM3199907
!Sample_title = cy94_cd45neg_cd90pos_H06_S378_comb
!Sample_geo_accession = GSM3199907
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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^SAMPLE = GSM3199908
!Sample_title = cy88_cd45pos_5_E03_S243_comb
!Sample_geo_accession = GSM3199908
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199909
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199910
!Sample_title = cy80_Cd45_pos_Pd1_neg_S221_B05_S221_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448930
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199911
!Sample_title = cy79_p3_CD45_pos_PD1_neg_E01_S145_comb
!Sample_geo_accession = GSM3199911
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448929
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3199912
!Sample_title = cy94_cd45pos_G11_S179_comb
!Sample_geo_accession = GSM3199912
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448928
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199913
!Sample_title = CY88_3_B02_S590_comb
!Sample_geo_accession = GSM3199913
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448983
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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!Sample_title = cy94_cd45pos_C07_S127_comb
!Sample_geo_accession = GSM3199931
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_geo_accession = GSM3199932
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_geo_accession = GSM3199934
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = Cy81_Bulk_CD45_B11_S119_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199937
!Sample_title = Cy72_CD45_E02_S722_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_row_count = 0
^SAMPLE = GSM3199938
!Sample_title = Cy72_CD45_D03_S711_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448975
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3199939
!Sample_title = Cy81_Bulk_CD45_B07_S115_comb
!Sample_geo_accession = GSM3199939
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_organism_ch1 = Homo sapiens
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy72_CD45_pos_E01_S913_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199946
!Sample_title = CY89FNA_E08_S248_comb
!Sample_geo_accession = GSM3199946
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy88_cd45pos_5_C05_S221_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449027
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199948
!Sample_title = CY94CD45POS_1_F10_S166_comb
!Sample_geo_accession = GSM3199948
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449026
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199949
!Sample_title = cy60_1_cd_45_pos_3_E12_S348_comb
!Sample_geo_accession = GSM3199949
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel60
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449025
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199950
!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_C01_S985_comb
!Sample_geo_accession = GSM3199950
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449024
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199951
!Sample_title = cy88_cd_45_pos_3_F01_S637_comb
!Sample_geo_accession = GSM3199951
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449023
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199952
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_F05_S545_comb
!Sample_geo_accession = GSM3199952
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449022
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^SAMPLE = GSM3199953
!Sample_title = cy80_Cd45_pos_PD1_pos_D12_S96_comb
!Sample_geo_accession = GSM3199953
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449021
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199954
!Sample_title = cy60_1_cd_45_pos_3_A04_S292_comb
!Sample_geo_accession = GSM3199954
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199955
!Sample_title = cy82_CD45_neg_2_B02_S206_comb
!Sample_geo_accession = GSM3199955
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449019
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199956
!Sample_title = cy80_CD45_neg_B11_S887_comb
!Sample_geo_accession = GSM3199956
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449018
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^SAMPLE = GSM3199957
!Sample_title = cy80_Cd45_pos_Pd1_neg_S294_E06_S294_comb
!Sample_geo_accession = GSM3199957
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3199960
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy78_CD45_neg_2_C08_S608_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_F09_S1029_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449001
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3199974
!Sample_title = cy94_cd45pos_4_C10_S34_comb
!Sample_geo_accession = GSM3199974
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449068
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199975
!Sample_title = CY84_PRIM_POS_ALL_7_D02_S230_comb
!Sample_geo_accession = GSM3199975
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449067
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^SAMPLE = GSM3199976
!Sample_title = Cy72_CD45_H07_S763_comb
!Sample_geo_accession = GSM3199976
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449066
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!Sample_title = cy80_CD_90_pos_E04_S916_comb
!Sample_geo_accession = GSM3199977
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199978
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!Sample_geo_accession = GSM3199978
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3199979
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!Sample_geo_accession = GSM3199979
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449063
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199980
!Sample_title = CY89A_Core_15_F03_S63_comb
!Sample_geo_accession = GSM3199980
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449062
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3199981
!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_C06_S990_comb
!Sample_geo_accession = GSM3199981
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449061
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3199982
!Sample_title = CY88CD45POS_7_F09_S261_comb
!Sample_geo_accession = GSM3199982
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449439
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^SAMPLE = GSM3200000
!Sample_title = cy74_CD45_pos_D03_S711_comb
!Sample_geo_accession = GSM3200000
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3200001
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200002
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy94_cd45neg_cd90pos_H04_S376_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200005
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200007
!Sample_title = cy94_cd45neg_cd90pos_H12_S384_comb
!Sample_geo_accession = GSM3200007
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449431
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200008
!Sample_title = cy53_1_CD45_pos_1_D01_S37_comb
!Sample_geo_accession = GSM3200008
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_contact_country = USA
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!Sample_geo_accession = GSM3200017
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy53_1_CD45_pos_2_B08_S980_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD_90_pos_E09_S921_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200025
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449283
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200026
!Sample_title = cy53_1_CD45_pos_1_A05_S5_comb
!Sample_geo_accession = GSM3200026
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449282
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200027
!Sample_title = Cy74_CD45_E06_S438_comb
!Sample_geo_accession = GSM3200027
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449356
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200028
!Sample_title = cy94_cd45neg_cd90pos_E05_S341_comb
!Sample_geo_accession = GSM3200028
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449351
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200029
!Sample_title = cy94_cd45pos_4_E04_S52_comb
!Sample_geo_accession = GSM3200029
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449350
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^SAMPLE = GSM3200030
!Sample_title = CY89FNAQ2_C11_S419_comb
!Sample_geo_accession = GSM3200030
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449349
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_D04_S328_comb
!Sample_geo_accession = GSM3200031
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449348
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200032
!Sample_title = Cy72_CD45_A07_S679_comb
!Sample_geo_accession = GSM3200032
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449347
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200033
!Sample_title = CY88_5_F08_S740_comb
!Sample_geo_accession = GSM3200033
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449346
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200034
!Sample_title = cy80_CD_90_pos_D10_S910_comb
!Sample_geo_accession = GSM3200034
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy84_Primary_CD45_pos_H08_S476_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy84_Met_CD45_pos_H10_S958_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy84_Primary_CD45_pos_B08_S404_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_title = CY89A_CD45_POS_6_D06_S138_comb
!Sample_geo_accession = GSM3200052
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy53_1_CD45_neg_C01_S313_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy53_1_CD45_neg_A10_S298_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200057
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!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200058
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy88_cd_45_pos_D09_S429_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200060
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD_90_pos_C04_S892_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy74_CD45_pos_F02_S734_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_CD45_neg_E12_S924_comb
!Sample_geo_accession = GSM3200078
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200086
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy60_1_cd_45_pos_4_D12_S48_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD45_neg_F12_S456_comb
!Sample_geo_accession = GSM3200088
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy84_Primary_CD45_neg_G03_S1035_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200094
!Sample_title = cy94_cd45neg_cd90pos_E12_S348_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy82_CD45_pos_1_B12_S504_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200096
!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449419
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200104
!Sample_title = cy53_1_CD45_pos_2_B12_S984_comb
!Sample_geo_accession = GSM3200104
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200105
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200106
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200109
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200111
!Sample_title = cy94_cd45pos_4_G08_S80_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449411
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^SAMPLE = GSM3200112
!Sample_title = cy84_Primary_CD45_pos_E01_S433_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_title = cy80_Cd45_pos_Pd1_neg_S204_A12_S204_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy58_1_CD45_pos_B10_S598_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = CY89A_Core_15_E05_S53_comb
!Sample_geo_accession = GSM3200115
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200118
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200119
!Sample_title = Cy71_CD45_A04_S484_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449402
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200121
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_E07_S535_comb
!Sample_geo_accession = GSM3200121
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449401
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200122
!Sample_title = cy74_CD45_pos_G12_S756_comb
!Sample_geo_accession = GSM3200122
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel74
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449400
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200123
!Sample_title = CY88CD45_150813_F03_S351_comb
!Sample_geo_accession = GSM3200123
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449399
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200124
!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_C12_S996_comb
!Sample_geo_accession = GSM3200124
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449397
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200125
!Sample_title = CY89A_CD45_POS_6_G06_S174_comb
!Sample_geo_accession = GSM3200125
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449396
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200126
!Sample_title = cy80_CD45_neg_C08_S416_comb
!Sample_geo_accession = GSM3200126
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449395
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200127
!Sample_title = cy94_cd45neg_cd90pos_H11_S383_comb
!Sample_geo_accession = GSM3200127
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449394
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200128
!Sample_title = CY89A_Core_15_C12_S36_comb
!Sample_geo_accession = GSM3200128
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449460
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200129
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_H04_S568_comb
!Sample_geo_accession = GSM3200129
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449459
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200130
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_B11_S311_comb
!Sample_geo_accession = GSM3200130
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449458
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200131
!Sample_title = cy60_1_cd_45_pos_4_E06_S54_comb
!Sample_geo_accession = GSM3200131
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy60_1_cd_45_pos_4_A10_S10_comb
!Sample_geo_accession = GSM3200132
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_supplementary_file_1 = NONE
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!Sample_title = CY94CD45POS_1_H05_S185_comb
!Sample_geo_accession = GSM3200133
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3200134
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_geo_accession = GSM3200135
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448640
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3200136
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_E04_S532_comb
!Sample_geo_accession = GSM3200136
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200137
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!Sample_geo_accession = GSM3200137
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
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!Sample_title = cy80_Cd45_pos_Pd1_neg_S203_A11_S203_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy94_cd45pos_4_D07_S43_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200140
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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^SAMPLE = GSM3200145
!Sample_title = cy74_CD45_pos_D12_S720_comb
!Sample_geo_accession = GSM3200145
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200146
!Sample_title = cy80_Cd45_pos_Pd1_neg_S276_D12_S276_comb
!Sample_geo_accession = GSM3200146
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448629
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200147
!Sample_title = cy80_CD45_pos_PD1_pos_E09_S153_comb
!Sample_geo_accession = GSM3200147
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448628
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200148
!Sample_title = Cy72_CD45_A05_S677_comb
!Sample_geo_accession = GSM3200148
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448627
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200149
!Sample_title = cy80_CD45_neg_D07_S427_comb
!Sample_geo_accession = GSM3200149
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448626
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200150
!Sample_title = CY88_5_F12_S744_comb
!Sample_geo_accession = GSM3200150
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448625
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200151
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!Sample_geo_accession = GSM3200151
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448624
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^SAMPLE = GSM3200152
!Sample_title = CY89A_CD45_POS_6_F06_S162_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448623
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200153
!Sample_title = cy94_cd45pos_4_E10_S58_comb
!Sample_geo_accession = GSM3200153
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448622
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200154
!Sample_title = cy80_CD45_neg_B05_S401_comb
!Sample_geo_accession = GSM3200154
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448621
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200155
!Sample_title = CY89A_CD45_POS_10_B11_S215_comb
!Sample_geo_accession = GSM3200155
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy53_1_CD45_pos_1_F04_S64_comb
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447930
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!Sample_title = CY84_PRIM_POS_ALL_8_E07_S151_comb
!Sample_geo_accession = GSM3200173
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200181
!Sample_title = cy80_CD_90_pos_F03_S927_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY58_1_CD45_B06_S978_comb
!Sample_geo_accession = GSM3200182
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy88_cd_45_pos_E06_S438_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_title = cy84_Primary_CD45_pos_G02_S458_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200187
!Sample_title = cy94_cd45pos_4_B06_S18_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3200188
!Sample_title = cy94_cd45pos_4_D08_S44_comb
!Sample_geo_accession = GSM3200188
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200189
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200191
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200195
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448196
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200199
!Sample_title = cy53_1_CD45_pos_2_D05_S1001_comb
!Sample_geo_accession = GSM3200199
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_title = CY89A_CD45_POS_6_E01_S145_comb
!Sample_geo_accession = GSM3200200
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy80_Cd45_pos_Pd1_neg_S339_G03_S339_comb
!Sample_geo_accession = GSM3200201
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy72_CD45_pos_B06_S882_comb
!Sample_geo_accession = GSM3200202
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy94_cd45pos_A09_S105_comb
!Sample_geo_accession = GSM3200205
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200206
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448254
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^SAMPLE = GSM3200207
!Sample_title = CY89FNA_C06_S222_comb
!Sample_geo_accession = GSM3200207
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy53_1_CD45_neg_H03_S375_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448236
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200225
!Sample_title = cy60_1_cd_45_pos_3_D05_S329_comb
!Sample_geo_accession = GSM3200225
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448235
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3200226
!Sample_title = CY89COREQ1_C02_S314_comb
!Sample_geo_accession = GSM3200226
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448234
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy80_Cd45_pos_PD1_pos_C12_S72_comb
!Sample_geo_accession = GSM3200227
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
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!Sample_title = cy94_cd45pos_4_C06_S30_comb
!Sample_geo_accession = GSM3200228
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_CD45_neg_H05_S953_comb
!Sample_geo_accession = GSM3200229
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200230
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448230
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^SAMPLE = GSM3200231
!Sample_title = cy94_cd45neg_cd90pos_F01_S349_comb
!Sample_geo_accession = GSM3200231
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200232
!Sample_title = Cy72_CD45_G03_S747_comb
!Sample_geo_accession = GSM3200232
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448294
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200233
!Sample_title = CY89A_CD45_POS_6_B07_S115_comb
!Sample_geo_accession = GSM3200233
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448293
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!Sample_title = cy84_Primary_CD45_pos_A12_S396_comb
!Sample_geo_accession = GSM3200234
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY94CD45POS_1_G02_S170_comb
!Sample_geo_accession = GSM3200235
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy78_CD45_neg_3_B03_S687_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY89A_CD45_POS_6_C11_S131_comb
!Sample_geo_accession = GSM3200237
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200238
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3200239
!Sample_title = CY89FNA_G05_S269_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_A12_S972_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200241
!Sample_title = cy82_CD45_pos_2_D09_S525_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448275
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200251
!Sample_title = cy79_p3_CD45_pos_PD1_neg_F03_S159_comb
!Sample_geo_accession = GSM3200251
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200252
!Sample_title = cy82_CD45_pos_3_C08_S32_comb
!Sample_geo_accession = GSM3200252
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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!Sample_title = cy80_Cd45_pos_PD1_pos_S136_F04_S136_comb
!Sample_geo_accession = GSM3200253
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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!Sample_title = Cy81_Bulk_CD45_C09_S129_comb
!Sample_geo_accession = GSM3200254
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy53_1_CD45_pos_2_B09_S981_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy80_Cd45_pos_Pd1_neg_S245_C05_S245_comb
!Sample_geo_accession = GSM3200257
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3200258
!Sample_title = Cy72_CD45_B09_S693_comb
!Sample_geo_accession = GSM3200258
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448092
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200259
!Sample_title = cy94_cd45pos_4_C02_S26_comb
!Sample_geo_accession = GSM3200259
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448091
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200260
!Sample_title = cy94_cd45neg_cd90pos_A01_S289_comb
!Sample_geo_accession = GSM3200260
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448090
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200261
!Sample_title = cy80_CD45_neg_F10_S454_comb
!Sample_geo_accession = GSM3200261
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448089
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200262
!Sample_title = cy84_Primary_CD45_pos_D12_S432_comb
!Sample_geo_accession = GSM3200262
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel84
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448088
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200263
!Sample_title = cy80_Cd45_pos_Pd1_neg_S297_E09_S297_comb
!Sample_geo_accession = GSM3200263
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448087
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200264
!Sample_title = CY89A_CD45_POS_6_A11_S107_comb
!Sample_geo_accession = GSM3200264
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cell type: B.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448081
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200265
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_D08_S524_comb
!Sample_geo_accession = GSM3200265
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cell type: B.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448086
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200266
!Sample_title = CY88CD45_150813_H06_S378_comb
!Sample_geo_accession = GSM3200266
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448085
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200267
!Sample_title = CY89COREQ1_F05_S353_comb
!Sample_geo_accession = GSM3200267
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_geo_accession = GSM3200268
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3200269
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy72_CD45_pos_H04_S952_comb
!Sample_geo_accession = GSM3200270
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD_90_pos_F07_S931_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200273
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200274
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200275
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200276
!Sample_title = CY88CD45POS_2_H11_S479_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_geo_accession = GSM3200277
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3200278
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_Cd45_pos_Pd1_neg_S291_E03_S291_comb
!Sample_geo_accession = GSM3200279
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200280
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy53_1_CD45_pos_1_A09_S9_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200282
!Sample_title = CY89FNA_F08_S260_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200283
!Sample_title = CY89A_CD45_POS_10_A02_S194_comb
!Sample_geo_accession = GSM3200283
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200284
!Sample_title = Cy81_Bulk_CD45_G08_S176_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200285
!Sample_title = cy80_CD45_neg_E09_S441_comb
!Sample_geo_accession = GSM3200285
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_CD_90_pos_C05_S893_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy60_1_cd_45_pos_4_E08_S56_comb
!Sample_geo_accession = GSM3200287
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = CY94CD45POS_1_C03_S123_comb
!Sample_geo_accession = GSM3200288
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200289
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200291
!Sample_title = CY89A_CD45_POS_6_F01_S157_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200293
!Sample_title = cy80_Cd45_pos_Pd1_neg_S369_H09_S369_comb
!Sample_geo_accession = GSM3200293
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448221
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200294
!Sample_title = CY84_PRIM_POS_ALL_7_F12_S264_comb
!Sample_geo_accession = GSM3200294
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200295
!Sample_title = CY84_PRIM_POS_ALL_7_F02_S254_comb
!Sample_geo_accession = GSM3200295
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_B05_S977_comb
!Sample_geo_accession = GSM3200296
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy94_cd45neg_cd90pos_F11_S359_comb
!Sample_geo_accession = GSM3200297
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200298
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!Sample_geo_accession = GSM3200298
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200299
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = CY89A_Core_15_G02_S74_comb
!Sample_geo_accession = GSM3200300
!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200301
!Sample_title = Cy72_CD45_C10_S706_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448213
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200302
!Sample_title = CY88CD45_150813_C11_S323_comb
!Sample_geo_accession = GSM3200302
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448212
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200303
!Sample_title = cy53_1_CD45_neg_B11_S311_comb
!Sample_geo_accession = GSM3200303
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448211
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy79_p3_CD45_pos_PD1_neg_B12_S120_comb
!Sample_geo_accession = GSM3200304
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = CY94CD45POS_1_G10_S178_comb
!Sample_geo_accession = GSM3200305
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy80_CD45_pos_PD1_pos_B08_S116_comb
!Sample_geo_accession = GSM3200306
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3200307
!Sample_title = CY94CD45POS_1_A05_S101_comb
!Sample_geo_accession = GSM3200307
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3200308
!Sample_title = cy53_1_CD45_neg_D07_S331_comb
!Sample_geo_accession = GSM3200308
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448206
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200309
!Sample_title = cy88_cd_45_pos_F06_S450_comb
!Sample_geo_accession = GSM3200309
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448205
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200310
!Sample_title = cy82_CD45_pos_2_H04_S568_comb
!Sample_geo_accession = GSM3200310
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448266
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200320
!Sample_title = cy80_CD45_neg_C10_S898_comb
!Sample_geo_accession = GSM3200320
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448264
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy53_1_CD45_pos_1_A02_S2_comb
!Sample_geo_accession = GSM3200321
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448263
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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!Sample_title = cy58_1_CD45_pos_C04_S604_comb
!Sample_geo_accession = GSM3200322
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448262
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200323
!Sample_title = cy53_1_CD45_neg_H07_S379_comb
!Sample_geo_accession = GSM3200323
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = Cy81_FNA_CD45_H05_S281_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_B11_S503_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448265
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^SAMPLE = GSM3200326
!Sample_title = cy82_CD45_pos_2_C04_S508_comb
!Sample_geo_accession = GSM3200326
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448330
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200327
!Sample_title = cy82_CD45_pos_1_F01_S541_comb
!Sample_geo_accession = GSM3200327
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448329
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200328
!Sample_title = cy53_1_CD45_pos_2_H12_S1056_comb
!Sample_geo_accession = GSM3200328
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_institute = Broad Institute
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^SAMPLE = GSM3200329
!Sample_title = Cy72_CD45_A06_S678_comb
!Sample_geo_accession = GSM3200329
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = Cy72_CD45_F10_S742_comb
!Sample_geo_accession = GSM3200330
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = CY94CD45POS_1_E07_S151_comb
!Sample_geo_accession = GSM3200331
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3200335
!Sample_title = CY88CD45_150813_G11_S371_comb
!Sample_geo_accession = GSM3200335
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200336
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!Sample_geo_accession = GSM3200336
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448320
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200337
!Sample_title = cy60_1_cd_45_pos_4_H06_S90_comb
!Sample_geo_accession = GSM3200337
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448319
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200338
!Sample_title = CY84_PRIM_POS_ALL_8_D04_S136_comb
!Sample_geo_accession = GSM3200338
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = CY88CD45POS_2_F01_S445_comb
!Sample_geo_accession = GSM3200339
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = Cy80_II_CD45_C12_S900_comb
!Sample_geo_accession = GSM3200340
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200343
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!Sample_geo_accession = GSM3200343
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200344
!Sample_title = cy58_1_CD45_pos_B03_S591_comb
!Sample_geo_accession = GSM3200344
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449499
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200345
!Sample_title = cy82_CD45_pos_1_D06_S522_comb
!Sample_geo_accession = GSM3200345
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449498
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200346
!Sample_title = cy81_Bulk_CD45_neg_G02_S170_comb
!Sample_geo_accession = GSM3200346
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200347
!Sample_title = cy80_CD45_neg_A04_S868_comb
!Sample_geo_accession = GSM3200347
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200348
!Sample_title = CY89A_CD45_POS_6_C04_S124_comb
!Sample_geo_accession = GSM3200348
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy58_1_CD45_pos_A09_S585_comb
!Sample_geo_accession = GSM3200349
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200352
!Sample_title = CY88CD45_150813_A01_S289_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200353
!Sample_title = cy60_1_cd_45_pos_3_E11_S347_comb
!Sample_geo_accession = GSM3200353
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449555
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^SAMPLE = GSM3200354
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!Sample_geo_accession = GSM3200354
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY58_1_CD45_H08_S1052_comb
!Sample_geo_accession = GSM3200355
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200356
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3200357
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = CY58_1_CD45_F08_S1028_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_CD45_neg_E02_S434_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200360
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3200361
!Sample_title = cy58_1_CD45_pos_G11_S659_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449547
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^SAMPLE = GSM3200362
!Sample_title = CY89A_CD45_POS_6_D09_S141_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3200368
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^SAMPLE = GSM3200371
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449537
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200372
!Sample_title = cy94_cd45neg_cd90pos_E10_S346_comb
!Sample_geo_accession = GSM3200372
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449536
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200373
!Sample_title = cy94_cd45pos_4_G06_S78_comb
!Sample_geo_accession = GSM3200373
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448861
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200374
!Sample_title = cy94_cd45neg_cd90pos_F08_S356_comb
!Sample_geo_accession = GSM3200374
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448860
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200375
!Sample_title = cy84_Met_CD45_pos_H09_S957_comb
!Sample_geo_accession = GSM3200375
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448927
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200376
!Sample_title = cy78_CD45_neg_2_B11_S599_comb
!Sample_geo_accession = GSM3200376
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448925
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200377
!Sample_title = Cy72_CD45_C06_S702_comb
!Sample_geo_accession = GSM3200377
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel72
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448924
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200378
!Sample_title = cy53_1_CD45_neg_G06_S366_comb
!Sample_geo_accession = GSM3200378
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: NK
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448923
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200379
!Sample_title = cy82_CD45_pos_3_H01_S85_comb
!Sample_geo_accession = GSM3200379
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel82
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448922
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200380
!Sample_title = Cy71_CD45_B04_S496_comb
!Sample_geo_accession = GSM3200380
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448921
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200381
!Sample_title = Cy74_CD45_F10_S454_comb
!Sample_geo_accession = GSM3200381
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_title = cy88_cd45pos_5_B01_S205_comb
!Sample_geo_accession = GSM3200382
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy84_Primary_CD45_pos_A10_S394_comb
!Sample_geo_accession = GSM3200383
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = Cy81_Bulk_CD45_E11_S155_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200386
!Sample_title = cy78_CD45_neg_3_A06_S678_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200387
!Sample_title = CY94CD45POS_1_C05_S125_comb
!Sample_geo_accession = GSM3200387
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448914
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200388
!Sample_title = CY89A_Core_15_B09_S21_comb
!Sample_geo_accession = GSM3200388
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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^SAMPLE = GSM3200398
!Sample_title = cy53_1_CD45_pos_1_A08_S8_comb
!Sample_geo_accession = GSM3200398
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_title = CY89COREQ1_G07_S367_comb
!Sample_geo_accession = GSM3200399
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200404
!Sample_title = cy80_CD_90_pos_G06_S942_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200407
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200415
!Sample_title = cy94_cd45neg_cd90pos_G02_S362_comb
!Sample_geo_accession = GSM3200415
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy60_1_cd_45_pos_4_G04_S76_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200423
!Sample_title = cy72_CD45_pos_D02_S902_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448857
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!Sample_series_id = GSE115978
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!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_A09_S9_comb
!Sample_geo_accession = GSM3200424
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448856
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_G05_S1037_comb
!Sample_geo_accession = GSM3200425
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200426
!Sample_title = CY88CD45_150813_G06_S366_comb
!Sample_geo_accession = GSM3200426
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200427
!Sample_title = cy60_1_cd_45_pos_3_A06_S294_comb
!Sample_geo_accession = GSM3200427
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3200428
!Sample_title = CY88CD45POS_2_B09_S405_comb
!Sample_geo_accession = GSM3200428
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200429
!Sample_title = CY89A_CD45_POS_10_B06_S210_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448851
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200430
!Sample_title = CY89FNA_C09_S225_comb
!Sample_geo_accession = GSM3200430
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200431
!Sample_title = cy84_Primary_CD45_pos_C07_S415_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = CY84_PRIM_POS_ALL_6_C05_S413_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy60_1_cd_45_pos_3_G07_S367_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy78_CD45_neg_3_G01_S745_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_title = cy82_CD45_pos_3_B12_S24_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_title = cy94_cd45neg_cd90pos_D03_S327_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200439
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447902
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200441
!Sample_title = cy79_p4_CD45_neg_PDL1_pos_B08_S404_comb
!Sample_geo_accession = GSM3200441
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447901
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200442
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_C04_S508_comb
!Sample_geo_accession = GSM3200442
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447900
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200443
!Sample_title = CY84_PRIM_POS_ALL_6_C10_S418_comb
!Sample_geo_accession = GSM3200443
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447899
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200444
!Sample_title = cy60_1_cd_45_pos_3_H06_S378_comb
!Sample_geo_accession = GSM3200444
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447898
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200445
!Sample_title = cy80_CD_90_pos_E03_S915_comb
!Sample_geo_accession = GSM3200445
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200446
!Sample_title = Cy71_CD45_F02_S542_comb
!Sample_geo_accession = GSM3200446
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447897
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200447
!Sample_title = cy79_p3_CD45_pos_PD1_neg_B11_S119_comb
!Sample_geo_accession = GSM3200447
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447896
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200448
!Sample_title = cy79_p3_CD45_pos_PD1_neg_A09_S105_comb
!Sample_geo_accession = GSM3200448
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
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!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447895
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200449
!Sample_title = CY88CD45POS_7_B01_S205_comb
!Sample_geo_accession = GSM3200449
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449532
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200467
!Sample_title = cy60_1_cd_45_pos_4_H08_S92_comb
!Sample_geo_accession = GSM3200467
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3200468
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200469
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!Sample_geo_accession = GSM3200469
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy84_Primary_CD45_pos_G09_S465_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200472
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200474
!Sample_title = CY88CD45_150813_A12_S300_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200475
!Sample_title = cy84_Primary_CD45_pos_H01_S469_comb
!Sample_geo_accession = GSM3200475
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_geo_accession = GSM3200476
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_CD_90_pos_D03_S903_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy94_cd45neg_cd90pos_D07_S331_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200482
!Sample_title = cy53_1_CD45_pos_1_E01_S49_comb
!Sample_geo_accession = GSM3200482
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200483
!Sample_title = CY89CORE11_G06_S174_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY89A_CD45_POS_6_A02_S98_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_title = cy94_cd45neg_cd90pos_C11_S323_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200486
!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200493
!Sample_title = CY89FNA_H07_S283_comb
!Sample_geo_accession = GSM3200493
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200501
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!Sample_organism_ch1 = Homo sapiens
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY88CD45_150813_C01_S313_comb
!Sample_geo_accession = GSM3200502
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_C09_S993_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = CY89COREQ1_H01_S373_comb
!Sample_geo_accession = GSM3200504
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy72_CD45_pos_E10_S922_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200507
!Sample_title = CY89NEG_B06_S18_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200508
!Sample_title = cy80_Cd45_pos_Pd1_neg_S200_A08_S200_comb
!Sample_geo_accession = GSM3200508
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200510
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_title = cy84_Primary_CD45_pos_A11_S395_comb
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_title = cy53_1_CD45_neg_B05_S305_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449076
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200519
!Sample_title = CY89A_CD45_POS_6_H09_S189_comb
!Sample_geo_accession = GSM3200519
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy74_CD45_pos_G10_S754_comb
!Sample_geo_accession = GSM3200520
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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^SAMPLE = GSM3200521
!Sample_title = cy72_CD45_pos_F02_S926_comb
!Sample_geo_accession = GSM3200521
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449073
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^SAMPLE = GSM3200522
!Sample_title = Cy81_FNA_CD45_D01_S229_comb
!Sample_geo_accession = GSM3200522
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200523
!Sample_title = cy94_cd45neg_cd90pos_B03_S303_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200524
!Sample_title = CY94CD45POS_1_E06_S150_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200525
!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_F08_S1028_comb
!Sample_geo_accession = GSM3200525
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200526
!Sample_title = cy53_1_CD45_pos_1_A03_S3_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449491
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200527
!Sample_title = cy79_p3_CD45_pos_PD1_neg_G06_S174_comb
!Sample_geo_accession = GSM3200527
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel79
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449490
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200528
!Sample_title = cy80_CD_90_pos_B06_S882_comb
!Sample_geo_accession = GSM3200528
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy94_cd45pos_4_H01_S85_comb
!Sample_geo_accession = GSM3200529
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_B03_S975_comb
!Sample_geo_accession = GSM3200530
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200531
!Sample_title = cy94_cd45neg_cd90pos_H08_S380_comb
!Sample_geo_accession = GSM3200531
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy79_p1_CD45_neg_PDL1_pos_AS_C1_R1_E09_S57_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200533
!Sample_title = cy80_CD45_neg_A06_S390_comb
!Sample_geo_accession = GSM3200533
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449482
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200534
!Sample_title = cy53_1_CD45_neg_B04_S304_comb
!Sample_geo_accession = GSM3200534
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449481
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3200535
!Sample_title = CY84_PRIM_POS_ALL_8_G07_S175_comb
!Sample_geo_accession = GSM3200535
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449486
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200536
!Sample_title = cy94_cd45pos_4_B12_S24_comb
!Sample_geo_accession = GSM3200536
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449485
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200537
!Sample_title = cy79_p5_CD45_neg_PDL1_neg_F04_S832_comb
!Sample_geo_accession = GSM3200537
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449480
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200538
!Sample_title = cy94_cd45neg_cd90pos_F02_S350_comb
!Sample_geo_accession = GSM3200538
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449479
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200539
!Sample_title = Cy74_CD45_A06_S390_comb
!Sample_geo_accession = GSM3200539
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449478
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200540
!Sample_title = cy84_Primary_CD45_pos_D01_S421_comb
!Sample_geo_accession = GSM3200540
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449477
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200541
!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_C04_S988_comb
!Sample_geo_accession = GSM3200541
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449476
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200542
!Sample_title = cy88_cd_45_pos_F02_S446_comb
!Sample_geo_accession = GSM3200542
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449475
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!Sample_data_row_count = 0
^SAMPLE = GSM3200543
!Sample_title = cy82_CD45_neg_1_D01_S229_comb
!Sample_geo_accession = GSM3200543
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449474
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3200544
!Sample_title = cy80_Cd45_pos_Pd1_neg_S346_G10_S346_comb
!Sample_geo_accession = GSM3200544
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449465
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200553
!Sample_title = cy60_1_cd_45_pos_3_G08_S368_comb
!Sample_geo_accession = GSM3200553
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3200554
!Sample_title = Cy81_Bulk_CD45_E07_S151_comb
!Sample_geo_accession = GSM3200554
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200555
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200558
!Sample_title = cy74_CD45_pos_B10_S694_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200559
!Sample_title = Cy81_Bulk_CD45_F07_S163_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_row_count = 0
^SAMPLE = GSM3200560
!Sample_title = cy72_CD45_pos_D04_S904_comb
!Sample_geo_accession = GSM3200560
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449524
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3200561
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!Sample_geo_accession = GSM3200561
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449522
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200562
!Sample_title = Cy72_CD45_D06_S714_comb
!Sample_geo_accession = GSM3200562
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy82_CD45_pos_3_B08_S20_comb
!Sample_geo_accession = GSM3200563
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
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!Sample_title = CY58_1_CD45_G12_S1044_comb
!Sample_geo_accession = GSM3200564
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = CY89A_CD45_POS_6_A06_S102_comb
!Sample_geo_accession = GSM3200565
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200566
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200567
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200568
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200569
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!Sample_geo_accession = GSM3200569
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200570
!Sample_title = cy94_cd45pos_4_C07_S31_comb
!Sample_geo_accession = GSM3200570
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449513
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200571
!Sample_title = cy60_1_cd_45_pos_3_A07_S295_comb
!Sample_geo_accession = GSM3200571
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200572
!Sample_title = cy72_CD45_pos_G01_S937_comb
!Sample_geo_accession = GSM3200572
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200573
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_D03_S519_comb
!Sample_geo_accession = GSM3200573
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200574
!Sample_title = CY89A_CD45_POS_10_E06_S246_comb
!Sample_geo_accession = GSM3200574
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200575
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200577
!Sample_title = cy80_Cd45_pos_Pd1_neg_S292_E04_S292_comb
!Sample_geo_accession = GSM3200577
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200578
!Sample_title = cy84_Met_CD45_pos_A02_S866_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200587
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448541
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200588
!Sample_title = CY89A_CD45_POS_6_H10_S190_comb
!Sample_geo_accession = GSM3200588
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448540
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200589
!Sample_title = CY88CD45_150813_C07_S319_comb
!Sample_geo_accession = GSM3200589
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448539
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200590
!Sample_title = cy94_cd45neg_cd90pos_A08_S296_comb
!Sample_geo_accession = GSM3200590
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448538
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200591
!Sample_title = cy72_CD45_pos_D12_S912_comb
!Sample_geo_accession = GSM3200591
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200592
!Sample_title = CY89A_CD45_POS_6_G12_S180_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200593
!Sample_title = cy60_1_cd_45_pos_4_G09_S81_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448535
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!Sample_data_row_count = 0
^SAMPLE = GSM3200594
!Sample_title = cy94_cd45pos_G07_S175_comb
!Sample_geo_accession = GSM3200594
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200595
!Sample_title = cy58_1_CD45_pos_C05_S605_comb
!Sample_geo_accession = GSM3200595
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448533
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3200596
!Sample_title = CY89A_Core_15_G09_S81_comb
!Sample_geo_accession = GSM3200596
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448532
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200597
!Sample_title = CY58_1_CD45_A11_S971_comb
!Sample_geo_accession = GSM3200597
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200598
!Sample_title = cy94_cd45pos_4_C08_S32_comb
!Sample_geo_accession = GSM3200598
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448530
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^SAMPLE = GSM3200599
!Sample_title = CY88CD45POS_2_H08_S476_comb
!Sample_geo_accession = GSM3200599
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = Cy81_Bulk_CD45_F08_S164_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200601
!Sample_title = Cy80_II_CD45_C03_S891_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200602
!Sample_title = cy82_CD45_neg_3_D03_S807_comb
!Sample_geo_accession = GSM3200602
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448526
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^SAMPLE = GSM3200603
!Sample_title = cy60_1_cd_45_neg_1_D12_S240_comb
!Sample_geo_accession = GSM3200603
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448525
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^SAMPLE = GSM3200604
!Sample_title = cy94_cd45pos_4_E03_S51_comb
!Sample_geo_accession = GSM3200604
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3200605
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448778
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200614
!Sample_title = Cy72_CD45_E09_S729_comb
!Sample_geo_accession = GSM3200614
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: post.treatment
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448777
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200615
!Sample_title = cy72_CD45_pos_G04_S940_comb
!Sample_geo_accession = GSM3200615
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448776
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200616
!Sample_title = CY88CD45POS_2_G11_S467_comb
!Sample_geo_accession = GSM3200616
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448775
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^SAMPLE = GSM3200617
!Sample_title = cy72_CD45_pos_E02_S914_comb
!Sample_geo_accession = GSM3200617
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200618
!Sample_title = cy78_CD45_neg_3_G05_S749_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448773
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200619
!Sample_title = cy79_p3_CD45_pos_PD1_neg_C10_S130_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448772
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3200620
!Sample_title = Cy72_CD45_B03_S687_comb
!Sample_geo_accession = GSM3200620
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448771
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200621
!Sample_title = CY88CD45_150813_H04_S376_comb
!Sample_geo_accession = GSM3200621
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448770
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200622
!Sample_title = cy84_Met_CD45_pos_F10_S934_comb
!Sample_geo_accession = GSM3200622
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448769
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200623
!Sample_title = cy60_1_cd_45_pos_3_D02_S326_comb
!Sample_geo_accession = GSM3200623
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448768
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200624
!Sample_title = cy79_p3_CD45_pos_PD1_neg_F08_S164_comb
!Sample_geo_accession = GSM3200624
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448767
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^SAMPLE = GSM3200625
!Sample_title = CY94CD45POS_1_C06_S126_comb
!Sample_geo_accession = GSM3200625
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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!Sample_title = CY88CD45POS_2_H10_S478_comb
!Sample_geo_accession = GSM3200626
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200627
!Sample_title = cy88_cd_45_pos_F05_S449_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200628
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_B10_S502_comb
!Sample_geo_accession = GSM3200628
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448763
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!Sample_data_row_count = 0
^SAMPLE = GSM3200629
!Sample_title = Cy81_Bulk_CD45_E09_S153_comb
!Sample_geo_accession = GSM3200629
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448762
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^SAMPLE = GSM3200630
!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_G02_S1034_comb
!Sample_geo_accession = GSM3200630
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_title = Cy81_FNA_CD45_F12_S264_comb
!Sample_geo_accession = GSM3200631
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_title = cy88_cd_45_pos_3_F05_S641_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = CY89A_CD45_POS_6_F07_S163_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200639
!Sample_title = CY94CD45POS_1_A10_S106_comb
!Sample_geo_accession = GSM3200639
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448752
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!Sample_title = CY89A_CD45_POS_6_D01_S133_comb
!Sample_geo_accession = GSM3200640
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy84_Primary_CD45_pos_D02_S422_comb
!Sample_geo_accession = GSM3200641
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200642
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200646
!Sample_title = CY89A_CD45_POS_6_D08_S140_comb
!Sample_geo_accession = GSM3200646
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200647
!Sample_title = cy84_Primary_CD45_pos_C09_S417_comb
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200648
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!Sample_geo_accession = GSM3200648
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200649
!Sample_title = CY88CD45POS_7_F03_S255_comb
!Sample_geo_accession = GSM3200649
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200650
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3200654
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200655
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200656
!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_E02_S1010_comb
!Sample_geo_accession = GSM3200656
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448808
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^SAMPLE = GSM3200657
!Sample_title = Cy74_CD45_B02_S398_comb
!Sample_geo_accession = GSM3200657
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200658
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!Sample_geo_accession = GSM3200658
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3200662
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200665
!Sample_title = cy84_Primary_CD45_pos_B05_S401_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447841
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200683
!Sample_title = cy53_1_CD45_pos_1_B02_S14_comb
!Sample_geo_accession = GSM3200683
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200684
!Sample_title = CY94CD45POS_1_E10_S154_comb
!Sample_geo_accession = GSM3200684
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_A08_S968_comb
!Sample_geo_accession = GSM3200685
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200686
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!Sample_geo_accession = GSM3200686
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200687
!Sample_title = cy78_CD45_neg_1_H12_S576_comb
!Sample_geo_accession = GSM3200687
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200688
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!Sample_geo_accession = GSM3200688
!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200689
!Sample_title = CY94CD45POS_1_D06_S138_comb
!Sample_geo_accession = GSM3200689
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200690
!Sample_title = CY88CD45_150813_F05_S353_comb
!Sample_geo_accession = GSM3200690
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447833
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3200691
!Sample_title = Cy72_CD45_H01_S757_comb
!Sample_geo_accession = GSM3200691
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200692
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200698
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449308
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200709
!Sample_title = cy94_cd45neg_cd90pos_D11_S335_comb
!Sample_geo_accession = GSM3200709
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy79_p5_CD45_neg_PDL1_neg_B12_S792_comb
!Sample_geo_accession = GSM3200710
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3200711
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = Cy81_FNA_CD45_H10_S286_comb
!Sample_geo_accession = GSM3200712
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200713
!Sample_title = cy79_p4_CD45_pos_PD1_pos_C08_S320_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200714
!Sample_title = CY88CD45_150813_G12_S372_comb
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200715
!Sample_title = CY88CD45POS_2_F07_S451_comb
!Sample_geo_accession = GSM3200715
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200716
!Sample_title = cy94_cd45neg_cd90pos_H09_S381_comb
!Sample_geo_accession = GSM3200716
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449301
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200717
!Sample_title = CY94CD45POS_1_B01_S109_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = Cy71_CD45_A09_S489_comb
!Sample_geo_accession = GSM3200718
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy53_1_CD45_pos_2_D03_S999_comb
!Sample_geo_accession = GSM3200719
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy94_cd45neg_cd90pos_A06_S294_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = cy84_Primary_CD45_neg_A12_S972_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200723
!Sample_title = cy94_cd45neg_cd90pos_D04_S328_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200724
!Sample_title = cy94_cd45pos_4_H06_S90_comb
!Sample_geo_accession = GSM3200724
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200725
!Sample_title = cy80_cd_90_neg_H12_S192_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447828
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200726
!Sample_title = cy94_cd45pos_4_B09_S21_comb
!Sample_geo_accession = GSM3200726
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447827
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200727
!Sample_title = Cy71_CD45_H03_S663_comb
!Sample_geo_accession = GSM3200727
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel71
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447826
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200728
!Sample_title = cy88_cd_45_pos_H12_S480_comb
!Sample_geo_accession = GSM3200728
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel88
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447825
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200729
!Sample_title = CY89A_CD45_POS_6_A10_S106_comb
!Sample_geo_accession = GSM3200729
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel89
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447824
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200730
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_E06_S246_comb
!Sample_geo_accession = GSM3200730
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447893
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200731
!Sample_title = cy82_CD45_pos_3_D04_S40_comb
!Sample_geo_accession = GSM3200731
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447892
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200732
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_E03_S531_comb
!Sample_geo_accession = GSM3200732
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447891
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200733
!Sample_title = cy94_cd45neg_cd90pos_H03_S375_comb
!Sample_geo_accession = GSM3200733
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447890
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200734
!Sample_title = cy94_cd45pos_F12_S168_comb
!Sample_geo_accession = GSM3200734
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy94_cd45neg_cd90pos_F12_S360_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447872
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200752
!Sample_title = cy78_CD45_neg_2_A08_S584_comb
!Sample_geo_accession = GSM3200752
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel78
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447871
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200753
!Sample_title = cy72_CD45_pos_C10_S898_comb
!Sample_geo_accession = GSM3200753
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447870
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200754
!Sample_title = CY94CD45POS_1_B07_S115_comb
!Sample_geo_accession = GSM3200754
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447869
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200755
!Sample_title = cy79_p3_CD45_neg_PD1_pos_AS_C3_R1_C07_S319_comb
!Sample_geo_accession = GSM3200755
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448523
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200756
!Sample_title = cy84_Primary_CD45_pos_D08_S428_comb
!Sample_geo_accession = GSM3200756
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448522
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200757
!Sample_title = CY89A_CD45_POS_6_A04_S100_comb
!Sample_geo_accession = GSM3200757
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448521
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200758
!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_H07_S1051_comb
!Sample_geo_accession = GSM3200758
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448520
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200759
!Sample_title = cy94_cd45neg_cd90pos_H02_S374_comb
!Sample_geo_accession = GSM3200759
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448519
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200760
!Sample_title = CY88CD45_150813_F08_S356_comb
!Sample_geo_accession = GSM3200760
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448518
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200761
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_C07_S511_comb
!Sample_geo_accession = GSM3200761
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448517
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200762
!Sample_title = cy79_p4_CD45_neg_PDL1_neg_C04_S1084_comb
!Sample_geo_accession = GSM3200762
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448516
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200763
!Sample_title = CY88CD45POS_2_G07_S463_comb
!Sample_geo_accession = GSM3200763
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200764
!Sample_title = CY84_PRIM_POS_ALL_8_A02_S98_comb
!Sample_geo_accession = GSM3200764
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cell type: Macrophage
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200765
!Sample_title = CY88_3_C09_S609_comb
!Sample_geo_accession = GSM3200765
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448513
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^SAMPLE = GSM3200766
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!Sample_geo_accession = GSM3200766
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448512
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200767
!Sample_title = cy82_CD45_pos_1_D05_S521_comb
!Sample_geo_accession = GSM3200767
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel82
!Sample_characteristics_ch1 = treatment-group: treatment.naive
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!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448511
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200768
!Sample_title = cy94_cd45neg_cd90pos_B08_S308_comb
!Sample_geo_accession = GSM3200768
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_G12_S564_comb
!Sample_geo_accession = GSM3200778
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200779
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200782
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200783
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200784
!Sample_title = cy72_CD45_pos_A02_S866_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3200786
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448106
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200787
!Sample_title = cy80_Cd45_pos_Pd1_neg_S293_E05_S293_comb
!Sample_geo_accession = GSM3200787
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: NK
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448105
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200788
!Sample_title = cy58_1_CD45_pos_C08_S608_comb
!Sample_geo_accession = GSM3200788
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448104
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200789
!Sample_title = cy53_1_CD45_neg_G02_S362_comb
!Sample_geo_accession = GSM3200789
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel53
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448103
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200790
!Sample_title = cy60_1_cd_45_pos_3_E07_S343_comb
!Sample_geo_accession = GSM3200790
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448102
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200791
!Sample_title = CY84_PRIM_POS_ALL_6_E07_S439_comb
!Sample_geo_accession = GSM3200791
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448101
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200792
!Sample_title = CY88CD45POS_7_E02_S242_comb
!Sample_geo_accession = GSM3200792
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448164
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200793
!Sample_title = cy94_cd45pos_4_C03_S27_comb
!Sample_geo_accession = GSM3200793
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel94
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448162
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200794
!Sample_title = cy60_1_cd_45_pos_3_A08_S296_comb
!Sample_geo_accession = GSM3200794
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel60
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448161
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200795
!Sample_title = cy72_CD45_pos_F01_S925_comb
!Sample_geo_accession = GSM3200795
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448160
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200796
!Sample_title = CY89COREQ1_H10_S382_comb
!Sample_geo_accession = GSM3200796
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448159
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200797
!Sample_title = cy82_CD45_neg_2_E02_S242_comb
!Sample_geo_accession = GSM3200797
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448158
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!Sample_geo_accession = GSM3200798
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200799
!Sample_title = cy88_cd45pos_5_G03_S267_comb
!Sample_geo_accession = GSM3200799
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3200800
!Sample_title = cy94_cd45pos_4_C04_S28_comb
!Sample_geo_accession = GSM3200800
!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448154
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^SAMPLE = GSM3200801
!Sample_title = Cy80_II_CD45_A08_S872_comb
!Sample_geo_accession = GSM3200801
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200802
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_E02_S530_comb
!Sample_geo_accession = GSM3200802
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448152
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3200803
!Sample_title = cy94_cd45neg_cd90pos_A12_S300_comb
!Sample_geo_accession = GSM3200803
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = cy58_1_CD45_pos_C01_S601_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448684
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200821
!Sample_title = cy88_cd45pos_5_B02_S206_comb
!Sample_geo_accession = GSM3200821
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy80_CD45_neg_B06_S882_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200823
!Sample_title = Cy72_CD45_F08_S740_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200824
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!Sample_geo_accession = GSM3200824
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200825
!Sample_title = cy88_cd_45_pos_3_F11_S647_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200826
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy94_cd45pos_4_H05_S89_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200828
!Sample_title = cy84_Primary_CD45_pos_B06_S402_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448676
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200829
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!Sample_geo_accession = GSM3200829
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
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^SAMPLE = GSM3200847
!Sample_title = cy94_cd45pos_B01_S109_comb
!Sample_geo_accession = GSM3200847
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200855
!Sample_title = cy53_1_CD45_neg_D08_S332_comb
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448465
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200864
!Sample_title = cy82_CD45_pos_3_C06_S30_comb
!Sample_geo_accession = GSM3200864
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448464
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^SAMPLE = GSM3200865
!Sample_title = Cy81_Bulk_CD45_C12_S132_comb
!Sample_geo_accession = GSM3200865
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200866
!Sample_title = Cy72_CD45_H04_S760_comb
!Sample_geo_accession = GSM3200866
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy60_1_cd_45_pos_4_B03_S15_comb
!Sample_geo_accession = GSM3200867
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200868
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200869
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!Sample_geo_accession = GSM3200869
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_geo_accession = GSM3200870
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200871
!Sample_title = cy79_p3_CD45_pos_PD1_neg_G04_S172_comb
!Sample_geo_accession = GSM3200871
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448459
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3200872
!Sample_title = cy94_cd45pos_4_B04_S16_comb
!Sample_geo_accession = GSM3200872
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448458
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^SAMPLE = GSM3200873
!Sample_title = cy80_CD_90_pos_C02_S890_comb
!Sample_geo_accession = GSM3200873
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3200874
!Sample_title = CY89COREQ1_C08_S320_comb
!Sample_geo_accession = GSM3200874
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_E11_S1019_comb
!Sample_geo_accession = GSM3200882
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_Cd45_pos_Pd1_neg_S219_B03_S219_comb
!Sample_geo_accession = GSM3200883
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy80_Cd45_pos_Pd1_neg_S227_B11_S227_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_F03_S1023_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448441
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200890
!Sample_title = CY89A_Core_15_E04_S52_comb
!Sample_geo_accession = GSM3200890
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448440
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^SAMPLE = GSM3200891
!Sample_title = cy79_p3_CD45_neg_PDL1_neg_A12_S204_comb
!Sample_geo_accession = GSM3200891
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3200892
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!Sample_geo_accession = GSM3200892
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3200893
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200894
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200895
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200897
!Sample_title = CY88CD45POS_2_H12_S480_comb
!Sample_geo_accession = GSM3200897
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448439
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200898
!Sample_title = cy79_p3_CD45_pos_PD1_neg_C05_S125_comb
!Sample_geo_accession = GSM3200898
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448492
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3200916
!Sample_title = CY94CD45POS_1_E04_S148_comb
!Sample_geo_accession = GSM3200916
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_title = cy79_p3_CD45_pos_PD1_neg_G05_S173_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = Cy72_CD45_A08_S680_comb
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3200921
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200922
!Sample_title = CY89A_Core_15_A03_S3_comb
!Sample_geo_accession = GSM3200922
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3200923
!Sample_title = CY94CD45POS_1_G09_S177_comb
!Sample_geo_accession = GSM3200923
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448484
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3200924
!Sample_title = CY89A_CD45_POS_6_D11_S143_comb
!Sample_geo_accession = GSM3200924
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_title = Cy81_Bulk_CD45_C08_S128_comb
!Sample_geo_accession = GSM3200942
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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^SAMPLE = GSM3200968
!Sample_title = CY94CD45POS_1_H03_S183_comb
!Sample_geo_accession = GSM3200968
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200969
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200976
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200977
!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3200983
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3200994
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = cy88_cd45pos_5_D03_S231_comb
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201002
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448036
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201011
!Sample_title = cy80_CD_90_pos_C07_S895_comb
!Sample_geo_accession = GSM3201011
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448035
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201012
!Sample_title = cy80_CD_90_pos_H08_S956_comb
!Sample_geo_accession = GSM3201012
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel80
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: CAF
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448034
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201013
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_H12_S576_comb
!Sample_geo_accession = GSM3201013
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448099
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201014
!Sample_title = cy60_1_cd_45_pos_HC_pos_HLDAR_pos_F07_S1027_comb
!Sample_geo_accession = GSM3201014
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448098
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201015
!Sample_title = cy79_p1_CD45_pos_PD1_neg_AS_C1_R2_F08_S548_comb
!Sample_geo_accession = GSM3201015
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448033
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201016
!Sample_title = CY89COREQ1_C01_S313_comb
!Sample_geo_accession = GSM3201016
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448100
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201017
!Sample_title = CY88CD45POS_2_F09_S453_comb
!Sample_geo_accession = GSM3201017
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448599
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201018
!Sample_title = Cy74_CD45_G11_S467_comb
!Sample_geo_accession = GSM3201018
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448598
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201019
!Sample_title = CY84_PRIM_POS_ALL_7_A01_S193_comb
!Sample_geo_accession = GSM3201019
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel84
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_geo_accession = GSM3201020
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448580
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448417
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201063
!Sample_title = merck_cd45pos_PL3_S351
!Sample_geo_accession = GSM3201063
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448416
!Sample_supplementary_file_1 = NONE
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!Sample_title = merck_cd45negcd90neg_PL3_S236
!Sample_geo_accession = GSM3201064
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201065
!Sample_title = merck_cd45negcd90neg_PL3_S226
!Sample_geo_accession = GSM3201065
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201066
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201067
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201068
!Sample_title = merck_cd45pos_PL3_S346
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201069
!Sample_title = merck_cd45negcd90neg_PL3_S231
!Sample_geo_accession = GSM3201069
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201070
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448409
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201071
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!Sample_geo_accession = GSM3201071
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448303
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^SAMPLE = GSM3201089
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!Sample_geo_accession = GSM3201089
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448348
!Sample_supplementary_file_1 = NONE
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!Sample_geo_accession = GSM3201115
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448313
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!Sample_geo_accession = GSM3201116
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201123
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448553
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!Sample_geo_accession = GSM3201124
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201129
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201130
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448607
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201141
!Sample_title = merck_cd45pos_PL3_S313
!Sample_geo_accession = GSM3201141
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448604
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201142
!Sample_title = merck_cd45negcd90neg_PL3_S239
!Sample_geo_accession = GSM3201142
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_geo_accession = GSM3201143
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201144
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201145
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201146
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201147
!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S108
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201148
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201149
!Sample_title = Merck_CD45pos_pl4_S81
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448344
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201150
!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S131
!Sample_geo_accession = GSM3201150
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448343
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!Sample_geo_accession = GSM3201151
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3201152
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201153
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201154
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201155
!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S127
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201156
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201157
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448402
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201167
!Sample_title = Merck_CD45pos_pl4_S63
!Sample_geo_accession = GSM3201167
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448401
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!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S124
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201175
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449043
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201193
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!Sample_geo_accession = GSM3201193
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449042
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^SAMPLE = GSM3201194
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201197
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201198
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449034
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!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S97
!Sample_geo_accession = GSM3201202
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201208
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449947
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201219
!Sample_title = Merck_CD45pos_pl4_S8
!Sample_geo_accession = GSM3201219
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel194
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449946
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201220
!Sample_title = Merck_CD45pos_pl4_S94
!Sample_geo_accession = GSM3201220
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449945
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^SAMPLE = GSM3201221
!Sample_title = Merck_CD45pos_pl4_S93
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449944
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201222
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!Sample_geo_accession = GSM3201222
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449943
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201223
!Sample_title = Merck_CD45pos_pl4_S67
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449942
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3201224
!Sample_title = Merck_CD45pos_pl4_S29
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449941
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201225
!Sample_title = Merck_CD45pos_pl4_S11
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449940
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^SAMPLE = GSM3201226
!Sample_title = Merck_CD45pos_pl4_S71
!Sample_geo_accession = GSM3201226
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449939
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201227
!Sample_title = Merck_CD45pos_pl4_S66
!Sample_geo_accession = GSM3201227
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449938
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201228
!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S132
!Sample_geo_accession = GSM3201228
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449937
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!Sample_geo_accession = GSM3201229
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449935
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!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S119
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449932
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^SAMPLE = GSM3201234
!Sample_title = Merck_CD45pos_pl4_S76
!Sample_geo_accession = GSM3201234
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449769
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201245
!Sample_title = Merck_CD45pos_pl4_S4
!Sample_geo_accession = GSM3201245
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449768
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!Sample_title = Merck_CD45pos_pl4_S82
!Sample_geo_accession = GSM3201246
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_contact_country = USA
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!Sample_geo_accession = GSM3201247
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201249
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201250
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201251
!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S103
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449888
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^SAMPLE = GSM3201253
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09449887
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201254
!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S149
!Sample_geo_accession = GSM3201254
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
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!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S139
!Sample_geo_accession = GSM3201255
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201257
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201258
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201259
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S184
!Sample_geo_accession = GSM3201260
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448668
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201271
!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S173
!Sample_geo_accession = GSM3201271
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel194
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448667
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201272
!Sample_title = Merck_CD45pos_pl4_S88
!Sample_geo_accession = GSM3201272
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448666
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201273
!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S178
!Sample_geo_accession = GSM3201273
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448665
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201274
!Sample_title = Merck_CD45pos_pl4_S6
!Sample_geo_accession = GSM3201274
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448664
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201275
!Sample_title = Merck_CD45neg_EPCAMpos_pl4_S161
!Sample_geo_accession = GSM3201275
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201276
!Sample_title = cy102_CD45pos_S131
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448662
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201277
!Sample_title = cy112_CD45pos_S322
!Sample_geo_accession = GSM3201277
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448661
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201278
!Sample_title = cy98_CD45pos_CD8pos_S87
!Sample_geo_accession = GSM3201278
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448660
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201279
!Sample_title = cy110_CD45pos_S275
!Sample_geo_accession = GSM3201279
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201295
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448736
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201306
!Sample_title = cy112_CD45pos_S346
!Sample_geo_accession = GSM3201306
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448735
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201307
!Sample_title = cy110_CD45pos_S230
!Sample_geo_accession = GSM3201307
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448734
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^SAMPLE = GSM3201308
!Sample_title = cy110_CD45pos_S266
!Sample_geo_accession = GSM3201308
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3201309
!Sample_title = cy112_CD45pos_S317
!Sample_geo_accession = GSM3201309
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201310
!Sample_title = cy102_CD45pos_S159
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201311
!Sample_title = cy110_CD45pos_S227
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3201312
!Sample_title = cy98_CD45pos_CD8pos_S67
!Sample_geo_accession = GSM3201312
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201313
!Sample_title = cy110_CD45pos_S195
!Sample_geo_accession = GSM3201313
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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!Sample_title = cy98_CD45pos_CD8pos_S52
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy98_CD45pos_CD8pos_S43
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_title = cy98_CD45pos_CD8pos_S83
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_title = cy110_CD45pos_S283
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448718
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201323
!Sample_title = cy98_CD45pos_CD8pos_S82
!Sample_geo_accession = GSM3201323
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448717
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201324
!Sample_title = cy98_CD45pos_CD8pos_S76
!Sample_geo_accession = GSM3201324
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448716
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201325
!Sample_title = cy98_CD45pos_CD8pos_S55
!Sample_geo_accession = GSM3201325
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448715
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201326
!Sample_title = cy112_CD45pos_S299
!Sample_geo_accession = GSM3201326
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448847
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^SAMPLE = GSM3201327
!Sample_title = cy112_CD45pos_S327
!Sample_geo_accession = GSM3201327
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201328
!Sample_title = cy98_CD45pos_CD8pos_S2
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448845
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^SAMPLE = GSM3201329
!Sample_title = cy110_CD45pos_S271
!Sample_geo_accession = GSM3201329
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448844
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^SAMPLE = GSM3201330
!Sample_title = cy112_CD45pos_S324
!Sample_geo_accession = GSM3201330
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448843
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201331
!Sample_title = cy98_CD45pos_CD8pos_S31
!Sample_geo_accession = GSM3201331
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448842
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201332
!Sample_title = cy112_CD45pos_S381
!Sample_geo_accession = GSM3201332
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448841
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201333
!Sample_title = cy98_CD45pos_CD8pos_S36
!Sample_geo_accession = GSM3201333
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448840
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201334
!Sample_title = cy102_CD45pos_S98
!Sample_geo_accession = GSM3201334
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: post.treatment
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448839
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201335
!Sample_title = cy102_CD45pos_S147
!Sample_geo_accession = GSM3201335
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448838
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201336
!Sample_title = cy98_CD45pos_CD8pos_S91
!Sample_geo_accession = GSM3201336
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448837
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201337
!Sample_title = cy102_CD45pos_S123
!Sample_geo_accession = GSM3201337
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448836
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201338
!Sample_title = cy98_CD45pos_CD8pos_S63
!Sample_geo_accession = GSM3201338
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448835
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201339
!Sample_title = cy98_CD45pos_CD8pos_S17
!Sample_geo_accession = GSM3201339
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448834
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201340
!Sample_title = cy102_CD45pos_S158
!Sample_geo_accession = GSM3201340
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Tophat
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448833
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3201346
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^SAMPLE = GSM3201347
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^SAMPLE = GSM3201348
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201353
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^SAMPLE = GSM3201354
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^SAMPLE = GSM3201356
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448701
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201358
!Sample_title = cy112_CD45pos_S355
!Sample_geo_accession = GSM3201358
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448700
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^SAMPLE = GSM3201359
!Sample_title = cy102_CD45pos_S171
!Sample_geo_accession = GSM3201359
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448699
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^SAMPLE = GSM3201360
!Sample_title = cy98_CD45pos_CD8pos_S27
!Sample_geo_accession = GSM3201360
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201361
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201362
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201363
!Sample_title = cy102_CD45pos_S188
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201364
!Sample_title = cy110_CD45pos_S285
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201365
!Sample_title = cy102_CD45pos_S141
!Sample_geo_accession = GSM3201365
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448693
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201366
!Sample_title = cy102_CD45pos_S169
!Sample_geo_accession = GSM3201366
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448692
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^SAMPLE = GSM3201367
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!Sample_geo_accession = GSM3201367
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201368
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201369
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201370
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3201371
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201372
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201373
!Sample_title = cy98_CD45pos_CD8pos_S65
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3201374
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450201
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201384
!Sample_title = cy112_CD45pos_S344
!Sample_geo_accession = GSM3201384
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450200
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201385
!Sample_title = cy110_CD45pos_S250
!Sample_geo_accession = GSM3201385
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450199
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201386
!Sample_title = cy98_CD45pos_CD8pos_S22
!Sample_geo_accession = GSM3201386
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450198
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201387
!Sample_title = cy98_CD45pos_CD8pos_S58
!Sample_geo_accession = GSM3201387
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450197
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201388
!Sample_title = cy112_CD45pos_S306
!Sample_geo_accession = GSM3201388
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450196
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201389
!Sample_title = cy98_CD45pos_CD8pos_S95
!Sample_geo_accession = GSM3201389
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450195
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201390
!Sample_title = cy102_CD45pos_S112
!Sample_geo_accession = GSM3201390
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450194
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201391
!Sample_title = cy102_CD45pos_S114
!Sample_geo_accession = GSM3201391
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450193
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201392
!Sample_title = cy102_CD45pos_S97
!Sample_geo_accession = GSM3201392
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450192
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!Sample_geo_accession = GSM3201393
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201399
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450132
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201410
!Sample_title = cy102_CD45pos_S126
!Sample_geo_accession = GSM3201410
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450131
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^SAMPLE = GSM3201411
!Sample_title = cy98_CD45pos_CD8pos_S30
!Sample_geo_accession = GSM3201411
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201412
!Sample_title = cy110_CD45pos_S248
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201413
!Sample_title = cy98_CD45pos_CD8pos_S39
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201414
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201418
!Sample_title = cy110_CD45pos_S225
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450122
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201419
!Sample_title = cy98_CD45pos_CD8pos_S25
!Sample_geo_accession = GSM3201419
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450121
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201420
!Sample_title = cy98_CD45pos_CD8pos_S24
!Sample_geo_accession = GSM3201420
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450120
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201421
!Sample_title = cy102_CD45pos_S175
!Sample_geo_accession = GSM3201421
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450119
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201422
!Sample_title = cy98_CD45pos_CD8pos_S51
!Sample_geo_accession = GSM3201422
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450118
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201423
!Sample_title = cy110_CD45pos_S246
!Sample_geo_accession = GSM3201423
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450117
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201424
!Sample_title = cy112_CD45pos_S295
!Sample_geo_accession = GSM3201424
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450116
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201425
!Sample_title = cy102_CD45pos_S167
!Sample_geo_accession = GSM3201425
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450115
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201426
!Sample_title = cy102_CD45pos_S181
!Sample_geo_accession = GSM3201426
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450181
!Sample_supplementary_file_1 = NONE
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450163
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201445
!Sample_title = cy102_CD45pos_S149
!Sample_geo_accession = GSM3201445
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201446
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!Sample_geo_accession = GSM3201446
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201447
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!Sample_geo_accession = GSM3201447
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201448
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201449
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201450
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201451
!Sample_title = cy102_CD45pos_S170
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201452
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201453
!Sample_title = cy112_CD45pos_S351
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!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450097
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201454
!Sample_title = cy98_CD45pos_CD8pos_S80
!Sample_geo_accession = GSM3201454
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450096
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!Sample_title = cy110_CD45pos_S287
!Sample_geo_accession = GSM3201455
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450094
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!Sample_geo_accession = GSM3201457
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201459
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!Sample_geo_accession = GSM3201459
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201460
!Sample_title = cy102_CD45pos_S183
!Sample_geo_accession = GSM3201460
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_title = cy102_CD45pos_S162
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201463
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201468
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^SAMPLE = GSM3201469
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^SAMPLE = GSM3201470
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450080
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201471
!Sample_title = cy112_CD45pos_S382
!Sample_geo_accession = GSM3201471
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450079
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201472
!Sample_title = cy112_CD45pos_S348
!Sample_geo_accession = GSM3201472
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450078
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^SAMPLE = GSM3201473
!Sample_title = cy102_CD45pos_S160
!Sample_geo_accession = GSM3201473
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450077
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^SAMPLE = GSM3201474
!Sample_title = cy112_CD45pos_S379
!Sample_geo_accession = GSM3201474
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450145
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^SAMPLE = GSM3201475
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!Sample_geo_accession = GSM3201475
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201476
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!Sample_geo_accession = GSM3201476
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201477
!Sample_title = cy110_CD45pos_S269
!Sample_geo_accession = GSM3201477
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201478
!Sample_title = cy98_CD45pos_CD8pos_S1
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450214
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^SAMPLE = GSM3201479
!Sample_title = cy102_CD45pos_S127
!Sample_geo_accession = GSM3201479
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450213
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^SAMPLE = GSM3201480
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!Sample_geo_accession = GSM3201480
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201481
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201483
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3201484
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201485
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201486
!Sample_title = cy112_CD45pos_S378
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
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^SAMPLE = GSM3201487
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450264
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201497
!Sample_title = cy102_CD45pos_S122
!Sample_geo_accession = GSM3201497
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450270
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201498
!Sample_title = cy112_CD45pos_S315
!Sample_geo_accession = GSM3201498
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450269
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201499
!Sample_title = cy98_CD45pos_CD8pos_S41
!Sample_geo_accession = GSM3201499
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450263
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201500
!Sample_title = cy112_CD45pos_S347
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201501
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201502
!Sample_title = cy102_CD45pos_S180
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201503
!Sample_title = cy102_CD45pos_S145
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201504
!Sample_title = cy112_CD45pos_S339
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201505
!Sample_title = cy98_CD45pos_CD8pos_S71
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450257
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201506
!Sample_title = cy98_CD45pos_CD8pos_S42
!Sample_geo_accession = GSM3201506
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450256
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201507
!Sample_title = cy110_CD45pos_S209
!Sample_geo_accession = GSM3201507
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448392
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201508
!Sample_title = cy102_CD45pos_S116
!Sample_geo_accession = GSM3201508
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448391
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201509
!Sample_title = cy110_CD45pos_S243
!Sample_geo_accession = GSM3201509
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448390
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201510
!Sample_title = cy102_CD45pos_S168
!Sample_geo_accession = GSM3201510
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448389
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201511
!Sample_title = cy102_CD45pos_S154
!Sample_geo_accession = GSM3201511
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448388
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201512
!Sample_title = cy98_CD45pos_CD8pos_S78
!Sample_geo_accession = GSM3201512
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448387
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201513
!Sample_title = cy103_CD45pos_S158
!Sample_geo_accession = GSM3201513
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448386
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201514
!Sample_title = cy103_CD45pos_S175
!Sample_geo_accession = GSM3201514
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy75_1CORE_CD45pos_S81
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448368
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201532
!Sample_title = cy103_CD45pos_S187
!Sample_geo_accession = GSM3201532
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448367
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201533
!Sample_title = cy75_1CORE_CD45pos_S23
!Sample_geo_accession = GSM3201533
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448366
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201534
!Sample_title = cy75_1CORE_CD45pos_S16
!Sample_geo_accession = GSM3201534
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448437
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^SAMPLE = GSM3201535
!Sample_title = cy103_CD45pos_S138
!Sample_geo_accession = GSM3201535
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448436
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201536
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201537
!Sample_title = cy75_1CORE_CD45pos_S33
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447590
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201538
!Sample_title = cy105_CD45pos_S215
!Sample_geo_accession = GSM3201538
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201539
!Sample_title = cy75_1CORE_CD45pos_S41
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447588
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201540
!Sample_title = cy103_CD45pos_S116
!Sample_geo_accession = GSM3201540
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447587
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!Sample_geo_accession = GSM3201541
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3201545
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201546
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201547
!Sample_title = cy105_CD45pos_S235
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201557
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447570
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201558
!Sample_title = cy106_CD45pos_S333
!Sample_geo_accession = GSM3201558
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447569
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201559
!Sample_title = cy75_1CORE_CD45pos_S64
!Sample_geo_accession = GSM3201559
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel75
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447568
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201560
!Sample_title = cy105_CD45pos_S252
!Sample_geo_accession = GSM3201560
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447567
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201561
!Sample_title = cy105_CD45pos_S206
!Sample_geo_accession = GSM3201561
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447566
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201562
!Sample_title = cy106_CD45pos_S309
!Sample_geo_accession = GSM3201562
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447565
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3201563
!Sample_title = cy105_CD45pos_S234
!Sample_geo_accession = GSM3201563
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447564
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201564
!Sample_title = cy105_CD45pos_S263
!Sample_geo_accession = GSM3201564
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447563
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^SAMPLE = GSM3201565
!Sample_title = cy103_CD45pos_S105
!Sample_geo_accession = GSM3201565
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447637
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201566
!Sample_title = cy106_CD45pos_S371
!Sample_geo_accession = GSM3201566
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447636
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^SAMPLE = GSM3201567
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!Sample_geo_accession = GSM3201567
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201573
!Sample_title = cy105_CD45pos_S273
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3201574
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447619
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201584
!Sample_title = cy75_1CORE_CD45pos_S75
!Sample_geo_accession = GSM3201584
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447618
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201585
!Sample_title = cy105_CD45pos_S209
!Sample_geo_accession = GSM3201585
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447617
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201586
!Sample_title = cy105_CD45pos_S254
!Sample_geo_accession = GSM3201586
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447616
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201587
!Sample_title = cy103_CD45pos_S139
!Sample_geo_accession = GSM3201587
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447615
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201588
!Sample_title = cy105_CD45pos_S268
!Sample_geo_accession = GSM3201588
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447614
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201589
!Sample_title = cy106_CD45pos_S335
!Sample_geo_accession = GSM3201589
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447613
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201590
!Sample_title = cy103_CD45pos_S149
!Sample_geo_accession = GSM3201590
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447612
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201591
!Sample_title = cy105_CD45pos_S214
!Sample_geo_accession = GSM3201591
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447611
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201592
!Sample_title = cy75_1CORE_CD45pos_S49
!Sample_geo_accession = GSM3201592
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447610
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447666
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201610
!Sample_title = cy75_1CORE_CD45pos_S14
!Sample_geo_accession = GSM3201610
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201611
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!Sample_geo_accession = GSM3201611
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201616
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201617
!Sample_title = cy75_1CORE_CD45pos_S85
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201618
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447657
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201619
!Sample_title = cy105_CD45pos_S258
!Sample_geo_accession = GSM3201619
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447656
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201620
!Sample_title = cy103_CD45pos_S153
!Sample_geo_accession = GSM3201620
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447655
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^SAMPLE = GSM3201621
!Sample_title = cy103_CD45pos_S172
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201622
!Sample_title = cy75_1CORE_CD45pos_S68
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201624
!Sample_title = cy105_CD45pos_S286
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447651
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3201625
!Sample_title = cy75_1CORE_CD45pos_S78
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy105_CD45pos_S278
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
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!Sample_contact_address = 415 Main Street
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447640
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!Sample_geo_accession = GSM3201636
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201637
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201639
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201643
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201644
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447708
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!Sample_geo_accession = GSM3201645
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201646
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201647
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3201649
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447682
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201671
!Sample_title = cy105_CD45pos_S275
!Sample_geo_accession = GSM3201671
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09447681
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201672
!Sample_title = cy103_CD45pos_S147
!Sample_geo_accession = GSM3201672
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201673
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!Sample_geo_accession = GSM3201673
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201674
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201675
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201676
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201677
!Sample_title = cy75_1CORE_CD45pos_S43
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201678
!Sample_title = cy105_CD45pos_S205
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201679
!Sample_title = cy106_CD45pos_S330
!Sample_geo_accession = GSM3201679
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3201680
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!Sample_geo_accession = GSM3201680
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201682
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201683
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201684
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201685
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201686
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3201687
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448019
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201697
!Sample_title = cy105_CD45pos_S203
!Sample_geo_accession = GSM3201697
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201698
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!Sample_geo_accession = GSM3201698
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201700
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201701
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3201702
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201705
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09448066
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^SAMPLE = GSM3201715
!Sample_title = cy105_CD45pos_S195
!Sample_geo_accession = GSM3201715
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201716
!Sample_title = cy106_CD45pos_S312
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy75_1CORE_CD45pos_S3
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy75_1CORE_CD45pos_S29
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201719
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201720
!Sample_title = cy75_1CORE_CD45pos_S37
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201721
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201722
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450967
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201723
!Sample_title = cy103_CD45pos_S166
!Sample_geo_accession = GSM3201723
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450966
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201724
!Sample_title = cy103_CD45pos_S126
!Sample_geo_accession = GSM3201724
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450965
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201725
!Sample_title = cy75_1CORE_CD45pos_S15
!Sample_geo_accession = GSM3201725
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451036
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201726
!Sample_title = cy75_1CORE_CD45pos_S46
!Sample_geo_accession = GSM3201726
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451035
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201727
!Sample_title = cy75_1CORE_CD45pos_S77
!Sample_geo_accession = GSM3201727
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451034
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201728
!Sample_title = cy105_CD45pos_S202
!Sample_geo_accession = GSM3201728
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel105
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451033
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201729
!Sample_title = cy106_CD45pos_S302
!Sample_geo_accession = GSM3201729
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451032
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201730
!Sample_title = cy103_CD45pos_S127
!Sample_geo_accession = GSM3201730
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451031
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201731
!Sample_title = cy103_CD45pos_S183
!Sample_geo_accession = GSM3201731
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451030
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201732
!Sample_title = cy75_1CORE_CD45pos_S89
!Sample_geo_accession = GSM3201732
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451029
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201733
!Sample_title = cy105_CD45pos_S208
!Sample_geo_accession = GSM3201733
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451028
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201734
!Sample_title = cy103_CD45pos_S121
!Sample_geo_accession = GSM3201734
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451027
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201735
!Sample_title = cy75_1CORE_CD45pos_S11
!Sample_geo_accession = GSM3201735
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451026
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201736
!Sample_title = cy103_CD45pos_S98
!Sample_geo_accession = GSM3201736
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451025
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201737
!Sample_title = cy103_CD45pos_S137
!Sample_geo_accession = GSM3201737
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451024
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201738
!Sample_title = cy75_1CORE_CD45pos_S96
!Sample_geo_accession = GSM3201738
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451023
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201739
!Sample_title = cy106_CD45pos_S342
!Sample_geo_accession = GSM3201739
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451022
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201740
!Sample_title = cy103_CD45pos_S135
!Sample_geo_accession = GSM3201740
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451021
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201741
!Sample_title = cy75_1CORE_CD45pos_S90
!Sample_geo_accession = GSM3201741
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451020
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^SAMPLE = GSM3201742
!Sample_title = cy106_CD45pos_S322
!Sample_geo_accession = GSM3201742
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201743
!Sample_title = cy105_CD45pos_S221
!Sample_geo_accession = GSM3201743
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201744
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!Sample_geo_accession = GSM3201744
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201745
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201746
!Sample_title = cy103_CD45pos_S168
!Sample_geo_accession = GSM3201746
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201747
!Sample_title = cy103_CD45pos_S97
!Sample_geo_accession = GSM3201747
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201748
!Sample_title = cy75_1CORE_CD45pos_S39
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451506
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201758
!Sample_title = cy105_CD45pos_S280
!Sample_geo_accession = GSM3201758
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451505
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201759
!Sample_title = cy75_1CORE_CD45pos_S94
!Sample_geo_accession = GSM3201759
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451504
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^SAMPLE = GSM3201760
!Sample_title = cy103_CD45pos_S163
!Sample_geo_accession = GSM3201760
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451503
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^SAMPLE = GSM3201761
!Sample_title = cy106_CD45pos_S347
!Sample_geo_accession = GSM3201761
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451502
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3201762
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201763
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451498
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^SAMPLE = GSM3201764
!Sample_title = cy75_1CORE_CD45pos_S69
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201765
!Sample_title = cy105_CD45pos_S237
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451496
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201766
!Sample_title = cy103_CD45pos_S148
!Sample_geo_accession = GSM3201766
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451495
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201767
!Sample_title = cy75_1CORE_CD45pos_S20
!Sample_geo_accession = GSM3201767
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201768
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!Sample_geo_accession = GSM3201768
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201769
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201770
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201771
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201772
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201773
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451178
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201784
!Sample_title = cy105_CD45pos_S223
!Sample_geo_accession = GSM3201784
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451177
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^SAMPLE = GSM3201785
!Sample_title = cy106_CD45pos_S349
!Sample_geo_accession = GSM3201785
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201786
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!Sample_geo_accession = GSM3201786
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201787
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!Sample_geo_accession = GSM3201787
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201788
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201789
!Sample_title = cy102_CD45neg_CD90neg_S94
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201790
!Sample_title = cy102_CD45neg_CD90neg_S2
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201791
!Sample_title = cy102_CD45neg_CD90neg_S6
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201792
!Sample_title = cy110_CD45neg_CD90neg_S221
!Sample_geo_accession = GSM3201792
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451169
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201793
!Sample_title = cy110_CD45neg_CD90neg_S251
!Sample_geo_accession = GSM3201793
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451168
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201794
!Sample_title = cy103_CD45neg_CD90neg_S104
!Sample_geo_accession = GSM3201794
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201795
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!Sample_geo_accession = GSM3201795
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201796
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!Sample_geo_accession = GSM3201796
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201797
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201798
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201799
!Sample_title = cy103_CD45neg_CD90neg_S149
!Sample_geo_accession = GSM3201799
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201800
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_title = cy103_CD45neg_CD90neg_S116
!Sample_geo_accession = GSM3201802
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_title = cy103_CD45neg_CD90neg_S126
!Sample_geo_accession = GSM3201803
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy102_CD45neg_CD90neg_S33
!Sample_geo_accession = GSM3201804
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201807
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201808
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!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450430
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201810
!Sample_title = cy112_CD45neg_CD90neg_S323
!Sample_geo_accession = GSM3201810
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450429
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201811
!Sample_title = cy103_CD45neg_CD90neg_S108
!Sample_geo_accession = GSM3201811
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450428
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201812
!Sample_title = cy102_CD45neg_CD90neg_S7
!Sample_geo_accession = GSM3201812
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450427
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201813
!Sample_title = cy112_CD45neg_CD90neg_S337
!Sample_geo_accession = GSM3201813
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel112
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450426
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201814
!Sample_title = cy103_CD45neg_CD90neg_S166
!Sample_geo_accession = GSM3201814
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450425
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201815
!Sample_title = cy103_CD45neg_CD90neg_S164
!Sample_geo_accession = GSM3201815
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450424
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201816
!Sample_title = cy110_CD45neg_CD90neg_S286
!Sample_geo_accession = GSM3201816
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450423
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201817
!Sample_title = cy102_CD45neg_CD90neg_S62
!Sample_geo_accession = GSM3201817
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450422
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201818
!Sample_title = cy110_CD45neg_CD90neg_S208
!Sample_geo_accession = GSM3201818
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450421
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201819
!Sample_title = cy110_CD45neg_CD90neg_S256
!Sample_geo_accession = GSM3201819
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450420
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201820
!Sample_title = cy103_CD45neg_CD90neg_S185
!Sample_geo_accession = GSM3201820
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450419
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201821
!Sample_title = cy102_CD45neg_CD90neg_S93
!Sample_geo_accession = GSM3201821
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450418
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201822
!Sample_title = cy110_CD45neg_CD90neg_S266
!Sample_geo_accession = GSM3201822
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450417
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201823
!Sample_title = cy102_CD45neg_CD90neg_S80
!Sample_geo_accession = GSM3201823
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450416
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201824
!Sample_title = cy112_CD45neg_CD90neg_S340
!Sample_geo_accession = GSM3201824
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450415
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201825
!Sample_title = cy103_CD45neg_CD90neg_S160
!Sample_geo_accession = GSM3201825
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450414
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201826
!Sample_title = cy103_CD45neg_CD90neg_S154
!Sample_geo_accession = GSM3201826
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450488
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201827
!Sample_title = cy102_CD45neg_CD90neg_S75
!Sample_geo_accession = GSM3201827
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450487
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201828
!Sample_title = cy103_CD45neg_CD90neg_S139
!Sample_geo_accession = GSM3201828
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450486
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201829
!Sample_title = cy103_CD45neg_CD90neg_S153
!Sample_geo_accession = GSM3201829
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450485
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^SAMPLE = GSM3201830
!Sample_title = cy110_CD45neg_CD90neg_S249
!Sample_geo_accession = GSM3201830
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450482
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^SAMPLE = GSM3201831
!Sample_title = cy110_CD45neg_CD90neg_S248
!Sample_geo_accession = GSM3201831
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450481
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^SAMPLE = GSM3201832
!Sample_title = cy110_CD45neg_CD90neg_S200
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201833
!Sample_title = cy102_CD45neg_CD90neg_S55
!Sample_geo_accession = GSM3201833
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450479
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3201834
!Sample_title = cy103_CD45neg_CD90neg_S182
!Sample_geo_accession = GSM3201834
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450484
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201835
!Sample_title = cy102_CD45neg_CD90neg_S11
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
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^SAMPLE = GSM3201836
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!Sample_geo_accession = GSM3201836
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450470
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201845
!Sample_title = cy103_CD45neg_CD90neg_S161
!Sample_geo_accession = GSM3201845
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450469
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201846
!Sample_title = cy103_CD45neg_CD90neg_S125
!Sample_geo_accession = GSM3201846
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel103
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450468
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201847
!Sample_title = cy103_CD45neg_CD90neg_S141
!Sample_geo_accession = GSM3201847
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450467
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201848
!Sample_title = cy110_CD45neg_CD90neg_S238
!Sample_geo_accession = GSM3201848
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450466
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201849
!Sample_title = cy110_CD45neg_CD90neg_S209
!Sample_geo_accession = GSM3201849
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450465
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^SAMPLE = GSM3201850
!Sample_title = cy103_CD45neg_CD90neg_S150
!Sample_geo_accession = GSM3201850
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450464
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3201851
!Sample_title = cy102_CD45neg_CD90neg_S20
!Sample_geo_accession = GSM3201851
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450463
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^SAMPLE = GSM3201852
!Sample_title = cy102_CD45neg_CD90neg_S29
!Sample_geo_accession = GSM3201852
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450462
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201853
!Sample_title = cy110_CD45neg_CD90neg_S193
!Sample_geo_accession = GSM3201853
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450461
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201854
!Sample_title = cy110_CD45neg_CD90neg_S261
!Sample_geo_accession = GSM3201854
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201859
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201860
!Sample_title = cy102_CD45neg_CD90neg_S81
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201862
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!Sample_geo_accession = GSM3201862
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201868
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201869
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201870
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450791
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201871
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!Sample_geo_accession = GSM3201871
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201872
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!Sample_geo_accession = GSM3201872
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201874
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3201876
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450782
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201880
!Sample_title = cy102_CD45neg_CD90neg_S15
!Sample_geo_accession = GSM3201880
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450781
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!Sample_title = cy103_CD45neg_CD90neg_S119
!Sample_geo_accession = GSM3201881
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3201883
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201885
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201886
!Sample_title = cy103_CD45neg_CD90neg_S99
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201887
!Sample_title = cy102_CD45neg_CD90neg_S83
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450810
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201897
!Sample_title = cy103_CD45neg_CD90neg_S184
!Sample_geo_accession = GSM3201897
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450809
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201898
!Sample_title = cy103_CD45neg_CD90neg_S100
!Sample_geo_accession = GSM3201898
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450808
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201899
!Sample_title = cy102_CD45neg_CD90neg_S95
!Sample_geo_accession = GSM3201899
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450807
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201900
!Sample_title = cy103_CD45neg_CD90neg_S121
!Sample_geo_accession = GSM3201900
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450806
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201901
!Sample_title = cy110_CD45neg_CD90neg_S223
!Sample_geo_accession = GSM3201901
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201902
!Sample_title = cy103_CD45neg_CD90neg_S189
!Sample_geo_accession = GSM3201902
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450804
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3201903
!Sample_title = cy103_CD45neg_CD90neg_S137
!Sample_geo_accession = GSM3201903
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450803
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3201904
!Sample_title = cy102_CD45neg_CD90neg_S92
!Sample_geo_accession = GSM3201904
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450802
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3201905
!Sample_title = cy112_CD45neg_CD90neg_S341
!Sample_geo_accession = GSM3201905
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450801
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201906
!Sample_title = cy110_CD45neg_CD90neg_S276
!Sample_geo_accession = GSM3201906
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450800
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201907
!Sample_title = cy103_CD45neg_CD90neg_S136
!Sample_geo_accession = GSM3201907
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450799
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201908
!Sample_title = cy112_CD45neg_CD90neg_S309
!Sample_geo_accession = GSM3201908
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: CAF
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450798
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201909
!Sample_title = cy102_CD45neg_CD90neg_S53
!Sample_geo_accession = GSM3201909
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450797
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201910
!Sample_title = cy102_CD45neg_CD90neg_S48
!Sample_geo_accession = GSM3201910
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450757
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201911
!Sample_title = cy110_CD45neg_CD90neg_S267
!Sample_geo_accession = GSM3201911
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450756
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201912
!Sample_title = cy102_CD45neg_CD90neg_S49
!Sample_geo_accession = GSM3201912
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450755
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201913
!Sample_title = cy110_CD45neg_CD90neg_S255
!Sample_geo_accession = GSM3201913
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450754
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201914
!Sample_title = cy103_CD45neg_CD90neg_S162
!Sample_geo_accession = GSM3201914
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450753
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201915
!Sample_title = cy102_CD45neg_CD90neg_S54
!Sample_geo_accession = GSM3201915
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450752
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201916
!Sample_title = cy103_CD45neg_CD90neg_S109
!Sample_geo_accession = GSM3201916
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450751
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201917
!Sample_title = cy103_CD45neg_CD90neg_S188
!Sample_geo_accession = GSM3201917
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450750
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^SAMPLE = GSM3201918
!Sample_title = cy103_CD45neg_CD90neg_S145
!Sample_geo_accession = GSM3201918
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201919
!Sample_title = cy102_CD45neg_CD90neg_S69
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450748
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3201920
!Sample_title = cy102_CD45neg_CD90neg_S60
!Sample_geo_accession = GSM3201920
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450827
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3201921
!Sample_title = cy110_CD45neg_CD90neg_S254
!Sample_geo_accession = GSM3201921
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450826
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3201922
!Sample_title = cy102_CD45neg_CD90neg_S17
!Sample_geo_accession = GSM3201922
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450825
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201923
!Sample_title = cy103_CD45neg_CD90neg_S190
!Sample_geo_accession = GSM3201923
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3201924
!Sample_title = cy102_CD45neg_CD90neg_S58
!Sample_geo_accession = GSM3201924
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201925
!Sample_title = cy110_CD45neg_CD90neg_S252
!Sample_geo_accession = GSM3201925
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201926
!Sample_title = cy102_CD45neg_CD90neg_S65
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3201927
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201928
!Sample_title = cy102_CD45neg_CD90neg_S90
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201929
!Sample_title = cy102_CD45neg_CD90neg_S32
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201930
!Sample_title = cy110_CD45neg_CD90neg_S247
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201931
!Sample_title = cy102_CD45neg_CD90neg_S19
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450819
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201932
!Sample_title = cy110_CD45neg_CD90neg_S205
!Sample_geo_accession = GSM3201932
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450818
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201933
!Sample_title = cy102_CD45neg_CD90neg_S46
!Sample_geo_accession = GSM3201933
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450817
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201934
!Sample_title = cy102_CD45neg_CD90neg_S61
!Sample_geo_accession = GSM3201934
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450816
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201935
!Sample_title = cy102_CD45neg_CD90neg_S31
!Sample_geo_accession = GSM3201935
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450815
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201936
!Sample_title = cy103_CD45neg_CD90neg_S152
!Sample_geo_accession = GSM3201936
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450814
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201937
!Sample_title = cy103_CD45neg_CD90neg_S118
!Sample_geo_accession = GSM3201937
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel103
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450813
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201938
!Sample_title = cy112_CD45neg_CD90neg_S330
!Sample_geo_accession = GSM3201938
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450812
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201939
!Sample_title = cy103_CD45neg_CD90neg_S165
!Sample_geo_accession = GSM3201939
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450811
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201940
!Sample_title = cy110_CD45neg_CD90neg_S213
!Sample_geo_accession = GSM3201940
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450879
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201941
!Sample_title = cy110_CD45neg_CD90neg_S285
!Sample_geo_accession = GSM3201941
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450878
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201942
!Sample_title = cy103_CD45neg_CD90neg_S157
!Sample_geo_accession = GSM3201942
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201943
!Sample_title = cy102_CD45neg_CD90neg_S36
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3201944
!Sample_title = cy103_CD45neg_CD90neg_S114
!Sample_geo_accession = GSM3201944
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201945
!Sample_title = cy102_CD45neg_CD90neg_S78
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201946
!Sample_title = cy112_CD45neg_CD90neg_S291
!Sample_geo_accession = GSM3201946
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_row_count = 0
^SAMPLE = GSM3201947
!Sample_title = cy103_CD45neg_CD90neg_S120
!Sample_geo_accession = GSM3201947
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201948
!Sample_title = cy102_CD45neg_CD90neg_S76
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450864
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201958
!Sample_title = cy110_CD45neg_CD90neg_S197
!Sample_geo_accession = GSM3201958
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450860
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201959
!Sample_title = cy102_CD45neg_CD90neg_S5
!Sample_geo_accession = GSM3201959
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450859
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^SAMPLE = GSM3201960
!Sample_title = cy102_CD45neg_CD90neg_S59
!Sample_geo_accession = GSM3201960
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450858
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^SAMPLE = GSM3201961
!Sample_title = cy102_CD45neg_CD90neg_S77
!Sample_geo_accession = GSM3201961
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201962
!Sample_title = cy102_CD45neg_CD90neg_S37
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201963
!Sample_title = cy103_CD45neg_CD90neg_S105
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201964
!Sample_title = cy103_CD45neg_CD90neg_S151
!Sample_geo_accession = GSM3201964
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201965
!Sample_title = cy102_CD45neg_CD90neg_S79
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450923
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3201966
!Sample_title = cy110_CD45neg_CD90neg_S288
!Sample_geo_accession = GSM3201966
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450922
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3201967
!Sample_title = cy103_CD45neg_CD90neg_S143
!Sample_geo_accession = GSM3201967
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450921
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201968
!Sample_title = cy102_CD45neg_CD90neg_S85
!Sample_geo_accession = GSM3201968
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450920
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201969
!Sample_title = cy103_CD45neg_CD90neg_S179
!Sample_geo_accession = GSM3201969
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450919
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201970
!Sample_title = cy102_CD45neg_CD90neg_S86
!Sample_geo_accession = GSM3201970
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3201971
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450929
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!Sample_data_row_count = 0
^SAMPLE = GSM3201972
!Sample_title = cy102_CD45neg_CD90neg_S18
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450928
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3201973
!Sample_title = cy110_CD45neg_CD90neg_S271
!Sample_geo_accession = GSM3201973
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3201974
!Sample_title = cy103_CD45neg_CD90neg_S186
!Sample_geo_accession = GSM3201974
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201980
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201981
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_contact_address = 415 Main Street
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450990
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3201984
!Sample_title = cy102_CD45neg_CD90neg_S71
!Sample_geo_accession = GSM3201984
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201985
!Sample_title = cy110_CD45neg_CD90neg_S226
!Sample_geo_accession = GSM3201985
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201986
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201987
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201989
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^SAMPLE = GSM3201990
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201991
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201992
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450981
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3201993
!Sample_title = cy102_CD45neg_CD90neg_S50
!Sample_geo_accession = GSM3201993
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3201995
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3201998
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202001
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452941
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202002
!Sample_title = cy112_CD45neg_CD90neg_S299
!Sample_geo_accession = GSM3202002
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452940
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202003
!Sample_title = cy110_CD45neg_CD90neg_S273
!Sample_geo_accession = GSM3202003
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452939
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202004
!Sample_title = cy102_CD45neg_CD90neg_S21
!Sample_geo_accession = GSM3202004
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452938
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202005
!Sample_title = cy103_CD45neg_CD90neg_S170
!Sample_geo_accession = GSM3202005
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452937
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202006
!Sample_title = cy110_CD45neg_CD90neg_S264
!Sample_geo_accession = GSM3202006
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452936
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202007
!Sample_title = cy103_CD45neg_CD90neg_S156
!Sample_geo_accession = GSM3202007
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452935
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202008
!Sample_title = cy110_CD45neg_CD90neg_S275
!Sample_geo_accession = GSM3202008
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452934
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202009
!Sample_title = cy110_CD45neg_CD90neg_S277
!Sample_geo_accession = GSM3202009
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452933
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202010
!Sample_title = cy102_CD45neg_CD90neg_S67
!Sample_geo_accession = GSM3202010
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452932
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202011
!Sample_title = cy110_CD45neg_CD90neg_S242
!Sample_geo_accession = GSM3202011
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452931
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202012
!Sample_title = cy102_CD45neg_CD90neg_S63
!Sample_geo_accession = GSM3202012
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452925
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202013
!Sample_title = cy110_CD45neg_CD90neg_S268
!Sample_geo_accession = GSM3202013
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452924
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^SAMPLE = GSM3202014
!Sample_title = cy102_CD45neg_CD90neg_S28
!Sample_geo_accession = GSM3202014
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452930
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^SAMPLE = GSM3202015
!Sample_title = cy112_CD45neg_CD90neg_S358
!Sample_geo_accession = GSM3202015
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452929
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^SAMPLE = GSM3202016
!Sample_title = cy110_CD45neg_CD90neg_S234
!Sample_geo_accession = GSM3202016
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452928
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^SAMPLE = GSM3202017
!Sample_title = cy75_1B_CD45pos_S32
!Sample_geo_accession = GSM3202017
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452927
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202018
!Sample_title = cy75_1B_CORE_CD45neg_S146
!Sample_geo_accession = GSM3202018
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: CAF
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452926
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202019
!Sample_title = cy106_CD45neg_S330
!Sample_geo_accession = GSM3202019
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452923
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202020
!Sample_title = cy75_1B_CD45pos_S37
!Sample_geo_accession = GSM3202020
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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^SAMPLE = GSM3202021
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!Sample_geo_accession = GSM3202021
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202022
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202023
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202024
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202025
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202026
!Sample_title = cy75_1B_CD45pos_S36
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452960
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^SAMPLE = GSM3202027
!Sample_title = cy75_1B_CD45pos_S71
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452959
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202028
!Sample_title = cy75_1B_CORE_CD45neg_S190
!Sample_geo_accession = GSM3202028
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: CAF
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452958
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202029
!Sample_title = cy105_CD45neg_S233
!Sample_geo_accession = GSM3202029
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452595
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202030
!Sample_title = cy106_CD45neg_S376
!Sample_geo_accession = GSM3202030
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452594
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^SAMPLE = GSM3202031
!Sample_title = cy106_CD45neg_S370
!Sample_geo_accession = GSM3202031
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202032
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202033
!Sample_title = cy105_CD45neg_S288
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452591
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202034
!Sample_title = cy75_1B_CD45pos_S2
!Sample_geo_accession = GSM3202034
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452590
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202035
!Sample_title = cy75_1B_CD45pos_S63
!Sample_geo_accession = GSM3202035
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452588
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!Sample_title = cy75_1B_CD45pos_S35
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy106_CD45neg_S348
!Sample_geo_accession = GSM3202038
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy105_CD45neg_S216
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy75_1B_CD45pos_S80
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy105_CD45neg_S277
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202042
!Sample_title = cy75_1B_CD45pos_S93
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202043
!Sample_title = cy75_1B_CD45pos_S90
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452580
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452571
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202054
!Sample_title = cy75_1B_CD45pos_S14
!Sample_geo_accession = GSM3202054
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452570
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202055
!Sample_title = cy106_CD45neg_S335
!Sample_geo_accession = GSM3202055
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452640
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202056
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!Sample_geo_accession = GSM3202056
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452639
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^SAMPLE = GSM3202057
!Sample_title = cy75_1B_CORE_CD45neg_S181
!Sample_geo_accession = GSM3202057
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202058
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202059
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202060
!Sample_title = cy105_CD45neg_S200
!Sample_geo_accession = GSM3202060
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202061
!Sample_title = cy75_1B_CORE_CD45neg_S177
!Sample_geo_accession = GSM3202061
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452743
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202062
!Sample_title = cy75_1B_CD45pos_S70
!Sample_geo_accession = GSM3202062
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452742
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202063
!Sample_title = cy105_CD45neg_S237
!Sample_geo_accession = GSM3202063
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452741
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy75_1B_CORE_CD45neg_S156
!Sample_geo_accession = GSM3202064
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452740
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^SAMPLE = GSM3202065
!Sample_title = cy75_1B_CD45pos_S81
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202066
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202067
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202068
!Sample_title = cy105_CD45neg_S259
!Sample_geo_accession = GSM3202068
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452736
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!Sample_data_row_count = 0
^SAMPLE = GSM3202069
!Sample_title = cy106_CD45neg_S343
!Sample_geo_accession = GSM3202069
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202070
!Sample_title = cy75_1B_CD45pos_S21
!Sample_geo_accession = GSM3202070
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202076
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^SAMPLE = GSM3202078
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^SAMPLE = GSM3202079
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452725
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202080
!Sample_title = cy75_1B_CD45pos_S6
!Sample_geo_accession = GSM3202080
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452724
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202081
!Sample_title = cy75_1B_CD45pos_S61
!Sample_geo_accession = GSM3202081
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452723
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202082
!Sample_title = cy75_1B_CORE_CD45neg_S109
!Sample_geo_accession = GSM3202082
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452722
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202083
!Sample_title = cy106_CD45neg_S315
!Sample_geo_accession = GSM3202083
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452721
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202084
!Sample_title = cy75_1B_CORE_CD45neg_S110
!Sample_geo_accession = GSM3202084
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452720
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202085
!Sample_title = cy105_CD45neg_S278
!Sample_geo_accession = GSM3202085
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452719
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202086
!Sample_title = cy75_1B_CD45pos_S23
!Sample_geo_accession = GSM3202086
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452784
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202087
!Sample_title = cy75_1B_CD45pos_S20
!Sample_geo_accession = GSM3202087
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452783
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202088
!Sample_title = cy106_CD45neg_S347
!Sample_geo_accession = GSM3202088
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452782
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202089
!Sample_title = cy75_1B_CD45pos_S45
!Sample_geo_accession = GSM3202089
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3202090
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202093
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202094
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy106_CD45neg_S353
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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^SAMPLE = GSM3202103
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3202104
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452885
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^SAMPLE = GSM3202106
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!Sample_geo_accession = GSM3202106
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3202111
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!Sample_submission_date = Jun 18 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452874
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202115
!Sample_title = cy75_1B_CD45pos_S52
!Sample_geo_accession = GSM3202115
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452873
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202116
!Sample_title = cy75_1B_CORE_CD45neg_S135
!Sample_geo_accession = GSM3202116
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452872
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202117
!Sample_title = cy75_1B_CORE_CD45neg_S130
!Sample_geo_accession = GSM3202117
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452871
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy75_1B_CD45pos_S16
!Sample_geo_accession = GSM3202118
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452870
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^SAMPLE = GSM3202119
!Sample_title = cy75_1B_CD45pos_S65
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202120
!Sample_title = cy75_1B_CD45pos_S84
!Sample_geo_accession = GSM3202120
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452868
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202121
!Sample_title = cy106_CD45neg_S381
!Sample_geo_accession = GSM3202121
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452867
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202122
!Sample_title = cy105_CD45neg_S265
!Sample_geo_accession = GSM3202122
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy106_CD45neg_S377
!Sample_geo_accession = GSM3202123
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452865
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202124
!Sample_title = cy75_1B_CD45pos_S92
!Sample_geo_accession = GSM3202124
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452864
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202125
!Sample_title = cy75_1B_CD45pos_S44
!Sample_geo_accession = GSM3202125
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452863
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202126
!Sample_title = cy75_1B_CD45pos_S67
!Sample_geo_accession = GSM3202126
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452862
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202127
!Sample_title = cy105_CD45neg_S273
!Sample_geo_accession = GSM3202127
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452861
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202128
!Sample_title = cy75_1B_CORE_CD45neg_S171
!Sample_geo_accession = GSM3202128
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: CAF
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452860
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202129
!Sample_title = cy106_CD45neg_S372
!Sample_geo_accession = GSM3202129
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452859
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202130
!Sample_title = cy75_1B_CD45pos_S39
!Sample_geo_accession = GSM3202130
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452858
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202131
!Sample_title = cy75_1B_CORE_CD45neg_S104
!Sample_geo_accession = GSM3202131
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452857
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy105_CD45neg_S249
!Sample_geo_accession = GSM3202132
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy106_CD45neg_S331
!Sample_geo_accession = GSM3202133
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy75_1B_CD45pos_S82
!Sample_geo_accession = GSM3202134
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3202137
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202138
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3202139
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202140
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452915
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202141
!Sample_title = cy75_1B_CORE_CD45neg_S170
!Sample_geo_accession = GSM3202141
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202143
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202144
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202145
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!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202146
!Sample_title = cy75_1B_CD45pos_S40
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202147
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202148
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452636
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!Sample_geo_accession = GSM3202150
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3202154
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy105_CD45neg_S215
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452619
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202167
!Sample_title = cy105_CD45neg_S202
!Sample_geo_accession = GSM3202167
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452618
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202168
!Sample_title = cy75_1B_CORE_CD45neg_S107
!Sample_geo_accession = GSM3202168
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: CAF
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452617
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202169
!Sample_title = cy106_CD45neg_S290
!Sample_geo_accession = GSM3202169
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452616
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202170
!Sample_title = cy75_1B_CD45pos_S49
!Sample_geo_accession = GSM3202170
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452615
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202171
!Sample_title = cy75_1B_CD45pos_S11
!Sample_geo_accession = GSM3202171
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452614
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202172
!Sample_title = cy75_1B_CD45pos_S50
!Sample_geo_accession = GSM3202172
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452613
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202173
!Sample_title = cy75_1B_CORE_CD45neg_S119
!Sample_geo_accession = GSM3202173
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452612
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202174
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S191
!Sample_geo_accession = GSM3202174
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452611
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202175
!Sample_title = cy116_CD45pos_S343
!Sample_geo_accession = GSM3202175
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452610
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202176
!Sample_title = cy116_CD45pos_S311
!Sample_geo_accession = GSM3202176
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452609
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202177
!Sample_title = cy116_CD45pos_S312
!Sample_geo_accession = GSM3202177
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452608
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202178
!Sample_title = cy98_CD45neg_CD90neg_S44
!Sample_geo_accession = GSM3202178
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452607
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202179
!Sample_title = cy98_CD45neg_CD90neg_S14
!Sample_geo_accession = GSM3202179
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452817
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202180
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S144
!Sample_geo_accession = GSM3202180
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452816
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202181
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S188
!Sample_geo_accession = GSM3202181
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452815
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202182
!Sample_title = cy98_CD45neg_CD90neg_S46
!Sample_geo_accession = GSM3202182
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452814
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202183
!Sample_title = cy98_CD45neg_CD90neg_S32
!Sample_geo_accession = GSM3202183
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452813
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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^SAMPLE = GSM3202189
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^SAMPLE = GSM3202190
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!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452804
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202193
!Sample_title = cy116_CD45pos_S289
!Sample_geo_accession = GSM3202193
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452797
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202194
!Sample_title = cy98_CD45neg_CD90neg_S72
!Sample_geo_accession = GSM3202194
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452803
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202195
!Sample_title = cy98_CD45neg_CD90neg_S56
!Sample_geo_accession = GSM3202195
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452802
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202196
!Sample_title = cy116_CD45pos_S349
!Sample_geo_accession = GSM3202196
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452801
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202197
!Sample_title = cy98_CD45neg_CD90neg_S71
!Sample_geo_accession = GSM3202197
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452800
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202198
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S181
!Sample_geo_accession = GSM3202198
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452799
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202199
!Sample_title = cy98_CD45neg_CD90neg_S84
!Sample_geo_accession = GSM3202199
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452798
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202200
!Sample_title = cy98_CD45neg_CD90neg_S30
!Sample_geo_accession = GSM3202200
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452796
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202201
!Sample_title = cy98_CD45neg_CD90neg_S23
!Sample_geo_accession = GSM3202201
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452795
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202202
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S124
!Sample_geo_accession = GSM3202202
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452794
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202203
!Sample_title = cy116_CD45pos_S361
!Sample_geo_accession = GSM3202203
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452793
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202204
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S143
!Sample_geo_accession = GSM3202204
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452792
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202205
!Sample_title = cy98_CD45neg_CD90neg_S5
!Sample_geo_accession = GSM3202205
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452791
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202206
!Sample_title = cy116_CD45pos_S341
!Sample_geo_accession = GSM3202206
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452790
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202207
!Sample_title = cy98_CD45neg_CD90neg_S6
!Sample_geo_accession = GSM3202207
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452789
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202208
!Sample_title = cy98_CD45neg_CD90neg_S49
!Sample_geo_accession = GSM3202208
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452788
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202209
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S148
!Sample_geo_accession = GSM3202209
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452781
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!Sample_geo_accession = GSM3202210
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202216
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452772
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202219
!Sample_title = cy98_CD45neg_CD90neg_S31
!Sample_geo_accession = GSM3202219
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452771
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202220
!Sample_title = cy98_CD45neg_CD90neg_S61
!Sample_geo_accession = GSM3202220
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452770
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202221
!Sample_title = cy98_CD45neg_CD90neg_S76
!Sample_geo_accession = GSM3202221
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452769
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202222
!Sample_title = cy116_CD45pos_S367
!Sample_geo_accession = GSM3202222
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452768
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202223
!Sample_title = cy98_CD45neg_CD90neg_S80
!Sample_geo_accession = GSM3202223
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452767
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202224
!Sample_title = cy98_CD45neg_CD90neg_S8
!Sample_geo_accession = GSM3202224
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452766
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202225
!Sample_title = cy98_CD45neg_CD90neg_S93
!Sample_geo_accession = GSM3202225
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452765
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202226
!Sample_title = cy116_CD45pos_S336
!Sample_geo_accession = GSM3202226
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452764
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202227
!Sample_title = cy98_CD45neg_CD90neg_S15
!Sample_geo_accession = GSM3202227
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452763
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202228
!Sample_title = cy116_CD45pos_S345
!Sample_geo_accession = GSM3202228
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452762
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202229
!Sample_title = cy116_CD45pos_S339
!Sample_geo_accession = GSM3202229
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452761
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202230
!Sample_title = cy116_CD45pos_S365
!Sample_geo_accession = GSM3202230
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452760
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202231
!Sample_title = cy116_CD45pos_S360
!Sample_geo_accession = GSM3202231
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452759
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202232
!Sample_title = cy98_CD45neg_CD90neg_S39
!Sample_geo_accession = GSM3202232
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452758
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202233
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S137
!Sample_geo_accession = GSM3202233
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452757
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202234
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S128
!Sample_geo_accession = GSM3202234
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452756
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202235
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S109
!Sample_geo_accession = GSM3202235
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452755
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202236
!Sample_title = cy98_CD45neg_CD90neg_S45
!Sample_geo_accession = GSM3202236
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452754
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202237
!Sample_title = cy98_CD45neg_CD90neg_S34
!Sample_geo_accession = GSM3202237
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452819
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202238
!Sample_title = cy98_CD45neg_CD90neg_S43
!Sample_geo_accession = GSM3202238
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202239
!Sample_title = cy116_CD45pos_S350
!Sample_geo_accession = GSM3202239
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202240
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S130
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202241
!Sample_title = cy116_CD45pos_S358
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202242
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S103
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202243
!Sample_title = cy116_CD45pos_S324
!Sample_geo_accession = GSM3202243
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450385
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202244
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S169
!Sample_geo_accession = GSM3202244
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450384
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202245
!Sample_title = cy116_CD45pos_S329
!Sample_geo_accession = GSM3202245
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450383
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202246
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S102
!Sample_geo_accession = GSM3202246
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450382
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202247
!Sample_title = cy98_CD45neg_CD90neg_S54
!Sample_geo_accession = GSM3202247
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450381
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202248
!Sample_title = cy98_CD45neg_CD90neg_S28
!Sample_geo_accession = GSM3202248
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450380
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202249
!Sample_title = cy98_CD45neg_CD90neg_S10
!Sample_geo_accession = GSM3202249
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450452
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202250
!Sample_title = cy116_CD45pos_S371
!Sample_geo_accession = GSM3202250
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450451
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202251
!Sample_title = cy98_CD45neg_CD90neg_S69
!Sample_geo_accession = GSM3202251
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450449
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202252
!Sample_title = cy116_CD45pos_S376
!Sample_geo_accession = GSM3202252
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450448
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202253
!Sample_title = cy116_CD45pos_S374
!Sample_geo_accession = GSM3202253
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450447
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202254
!Sample_title = cy98_CD45neg_CD90neg_S67
!Sample_geo_accession = GSM3202254
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450379
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202255
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S139
!Sample_geo_accession = GSM3202255
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450453
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^SAMPLE = GSM3202256
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S147
!Sample_geo_accession = GSM3202256
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450446
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^SAMPLE = GSM3202257
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S141
!Sample_geo_accession = GSM3202257
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3202258
!Sample_title = cy116_CD45pos_S380
!Sample_geo_accession = GSM3202258
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202259
!Sample_title = cy116_CD45pos_S362
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450443
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202260
!Sample_title = cy116_CD45pos_S309
!Sample_geo_accession = GSM3202260
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450442
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202261
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S105
!Sample_geo_accession = GSM3202261
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_title = cy116_CD45pos_S313
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_title = cy98_CD45neg_CD90neg_S77
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_title = cy98_CD45neg_CD90neg_S41
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S185
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3202267
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202268
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202269
!Sample_title = cy116_CD45pos_S378
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202270
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S158
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450718
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202271
!Sample_title = cy116_CD45pos_S322
!Sample_geo_accession = GSM3202271
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450717
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202272
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S97
!Sample_geo_accession = GSM3202272
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450716
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202273
!Sample_title = cy116_CD45pos_S290
!Sample_geo_accession = GSM3202273
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450715
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202274
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S192
!Sample_geo_accession = GSM3202274
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450714
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202275
!Sample_title = cy116_CD45pos_S318
!Sample_geo_accession = GSM3202275
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450713
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202276
!Sample_title = cy98_CD45neg_CD90neg_S38
!Sample_geo_accession = GSM3202276
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450712
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202277
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S107
!Sample_geo_accession = GSM3202277
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450711
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202278
!Sample_title = cy116_CD45pos_S292
!Sample_geo_accession = GSM3202278
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450710
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202279
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S183
!Sample_geo_accession = GSM3202279
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450778
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202280
!Sample_title = cy116_CD45pos_S327
!Sample_geo_accession = GSM3202280
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450777
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202281
!Sample_title = cy98_CD45neg_CD90neg_S68
!Sample_geo_accession = GSM3202281
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450776
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202282
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S171
!Sample_geo_accession = GSM3202282
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450770
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202283
!Sample_title = cy116_CD45pos_S305
!Sample_geo_accession = GSM3202283
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202284
!Sample_title = cy116_CD45pos_S340
!Sample_geo_accession = GSM3202284
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450775
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202285
!Sample_title = cy116_CD45pos_S333
!Sample_geo_accession = GSM3202285
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450774
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202286
!Sample_title = cy116_CD45pos_S306
!Sample_geo_accession = GSM3202286
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450773
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202287
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S157
!Sample_geo_accession = GSM3202287
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450760
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202297
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S123
!Sample_geo_accession = GSM3202297
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450759
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202298
!Sample_title = cy98_CD45neg_CD90neg_S53
!Sample_geo_accession = GSM3202298
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450758
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202299
!Sample_title = cy98_CD45neg_CD90neg_S58
!Sample_geo_accession = GSM3202299
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450525
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202300
!Sample_title = cy116_CD45pos_S303
!Sample_geo_accession = GSM3202300
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450524
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202301
!Sample_title = cy98_CD45neg_CD90neg_S64
!Sample_geo_accession = GSM3202301
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450523
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202302
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S121
!Sample_geo_accession = GSM3202302
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450522
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202303
!Sample_title = cy116_CD45pos_S363
!Sample_geo_accession = GSM3202303
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450521
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202304
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S140
!Sample_geo_accession = GSM3202304
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450520
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202305
!Sample_title = cy98_CD45neg_CD90neg_S91
!Sample_geo_accession = GSM3202305
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450519
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202306
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S150
!Sample_geo_accession = GSM3202306
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450518
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202307
!Sample_title = cy98_CD45neg_CD90neg_S86
!Sample_geo_accession = GSM3202307
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450517
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202308
!Sample_title = cy116_CD45pos_S332
!Sample_geo_accession = GSM3202308
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450515
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202309
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S182
!Sample_geo_accession = GSM3202309
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450514
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202310
!Sample_title = cy116_CD45neg_CD90neg_S244
!Sample_geo_accession = GSM3202310
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450513
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202311
!Sample_title = cy116_CD45pos_S293
!Sample_geo_accession = GSM3202311
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450512
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202312
!Sample_title = cy98_CD45neg_CD90neg_S62
!Sample_geo_accession = GSM3202312
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450511
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202313
!Sample_title = cy116_CD45pos_S379
!Sample_geo_accession = GSM3202313
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450510
!Sample_supplementary_file_1 = NONE
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S122
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202320
!Sample_title = cy98_CD45neg_CD90neg_S2
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3202321
!Sample_title = cy116_CD45pos_S351
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy116_CD45pos_S307
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450502
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202323
!Sample_title = cy98_CD45neg_CD90neg_S94
!Sample_geo_accession = GSM3202323
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450501
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202324
!Sample_title = cy116_CD45pos_S352
!Sample_geo_accession = GSM3202324
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450500
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202325
!Sample_title = cy116_CD45pos_S331
!Sample_geo_accession = GSM3202325
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450499
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202326
!Sample_title = cy116_CD45pos_S310
!Sample_geo_accession = GSM3202326
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450498
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202327
!Sample_title = cy116_CD45pos_S294
!Sample_geo_accession = GSM3202327
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450497
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202328
!Sample_title = cy116_CD45pos_S302
!Sample_geo_accession = GSM3202328
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450496
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202329
!Sample_title = cy98_CD45neg_CD90neg_S60
!Sample_geo_accession = GSM3202329
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450495
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202330
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S116
!Sample_geo_accession = GSM3202330
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450494
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202331
!Sample_title = cy98_CD45neg_CD90neg_S26
!Sample_geo_accession = GSM3202331
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450493
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202332
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S145
!Sample_geo_accession = GSM3202332
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450492
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202333
!Sample_title = cy116_CD45pos_S300
!Sample_geo_accession = GSM3202333
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450491
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202334
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S119
!Sample_geo_accession = GSM3202334
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450490
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202335
!Sample_title = cy116_CD45pos_S321
!Sample_geo_accession = GSM3202335
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450489
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202336
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S111
!Sample_geo_accession = GSM3202336
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450562
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202337
!Sample_title = cy98_CD45neg_CD90neg_S11
!Sample_geo_accession = GSM3202337
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450561
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202338
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S166
!Sample_geo_accession = GSM3202338
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450560
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202339
!Sample_title = cy116_CD45pos_S356
!Sample_geo_accession = GSM3202339
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450559
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S132
!Sample_geo_accession = GSM3202340
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy98_CD45neg_CD90neg_S36
!Sample_geo_accession = GSM3202341
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450557
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!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S127
!Sample_geo_accession = GSM3202342
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy116_CD45pos_S304
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S172
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202345
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202346
!Sample_title = cy98_CD45neg_CD90neg_S25
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202347
!Sample_title = cy116_CD45pos_S295
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202348
!Sample_title = cy116_CD45pos_S366
!Sample_geo_accession = GSM3202348
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450550
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202349
!Sample_title = cy116_CD45pos_S372
!Sample_geo_accession = GSM3202349
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450549
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202350
!Sample_title = cy116_CD45pos_S291
!Sample_geo_accession = GSM3202350
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450548
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202351
!Sample_title = cy98_CD45neg_CD90neg_S40
!Sample_geo_accession = GSM3202351
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450547
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202352
!Sample_title = cy98_CD45neg_CD90neg_S75
!Sample_geo_accession = GSM3202352
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450546
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202353
!Sample_title = cy116_CD45pos_S298
!Sample_geo_accession = GSM3202353
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450545
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202354
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S151
!Sample_geo_accession = GSM3202354
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cell type: Undetermined
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450544
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202355
!Sample_title = cy116_CD45pos_S370
!Sample_geo_accession = GSM3202355
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450543
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202356
!Sample_title = cy98_CD45neg_CD90neg_S66
!Sample_geo_accession = GSM3202356
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450542
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202357
!Sample_title = cy98_CD45neg_CD90neg_S18
!Sample_geo_accession = GSM3202357
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450540
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202358
!Sample_title = cy98_CD45neg_CD90neg_S50
!Sample_geo_accession = GSM3202358
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450539
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202359
!Sample_title = cy98_CD45neg_CD90neg_S29
!Sample_geo_accession = GSM3202359
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450677
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202360
!Sample_title = cy116_CD45pos_S316
!Sample_geo_accession = GSM3202360
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450676
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202361
!Sample_title = cy98_CD45neg_CD90neg_S88
!Sample_geo_accession = GSM3202361
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202362
!Sample_title = cy116_CD45pos_S373
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202363
!Sample_title = cy98_CD45neg_CD90neg_S57
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450673
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202364
!Sample_title = cy116_CD45pos_S320
!Sample_geo_accession = GSM3202364
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel116
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450744
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202365
!Sample_title = cy98_CD45neg_CD90neg_S22
!Sample_geo_accession = GSM3202365
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202366
!Sample_title = cy98_CD45neg_CD90neg_S51
!Sample_geo_accession = GSM3202366
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450742
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202367
!Sample_title = cy116_CD45pos_S382
!Sample_geo_accession = GSM3202367
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450741
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^SAMPLE = GSM3202368
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S134
!Sample_geo_accession = GSM3202368
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450739
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^SAMPLE = GSM3202369
!Sample_title = cy116_CD45pos_S355
!Sample_geo_accession = GSM3202369
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202370
!Sample_title = cy116_CD45pos_S377
!Sample_geo_accession = GSM3202370
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202371
!Sample_title = cy98_CD45neg_CD90neg_S90
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450736
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202372
!Sample_title = cy98_CD45neg_CD90neg_S27
!Sample_geo_accession = GSM3202372
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450735
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^SAMPLE = GSM3202373
!Sample_title = cy98_CD45neg_CD90neg_S16
!Sample_geo_accession = GSM3202373
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450734
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202374
!Sample_title = cy105_Zombineg_CD45neg_CD90neg_S100
!Sample_geo_accession = GSM3202374
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450740
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202375
!Sample_title = cy98_CD45neg_CD90neg_S4
!Sample_geo_accession = GSM3202375
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450733
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202376
!Sample_title = cy98_CD45neg_CD90neg_S7
!Sample_geo_accession = GSM3202376
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel98
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450732
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202377
!Sample_title = cy116_CD45pos_S319
!Sample_geo_accession = GSM3202377
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450731
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202378
!Sample_title = cy116_CD45pos_S325
!Sample_geo_accession = GSM3202378
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450730
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202379
!Sample_title = cy116_CD45pos_S383
!Sample_geo_accession = GSM3202379
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450729
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202380
!Sample_title = cy98_CD45neg_CD90neg_S1
!Sample_geo_accession = GSM3202380
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450728
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202381
!Sample_title = cy112_CD45neg_CD90neg_S120
!Sample_geo_accession = GSM3202381
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450727
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202382
!Sample_title = cy102_CD45neg_CD90neg_S340
!Sample_geo_accession = GSM3202382
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450726
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202383
!Sample_title = cy102_CD45neg_CD90neg_S376
!Sample_geo_accession = GSM3202383
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450725
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202384
!Sample_title = cy112_CD45pos_S9
!Sample_geo_accession = GSM3202384
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450724
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202385
!Sample_title = cy102_CD45neg_CD90neg_S290
!Sample_geo_accession = GSM3202385
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450723
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202386
!Sample_title = cy102_CD45pos_S196
!Sample_geo_accession = GSM3202386
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450722
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202387
!Sample_title = cy102_CD45pos_S211
!Sample_geo_accession = GSM3202387
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450721
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202388
!Sample_title = cy102_CD45pos_S272
!Sample_geo_accession = GSM3202388
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450720
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202389
!Sample_title = cy102_CD45pos_S274
!Sample_geo_accession = GSM3202389
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451106
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202390
!Sample_title = cy102_CD45neg_CD90neg_S331
!Sample_geo_accession = GSM3202390
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451105
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202391
!Sample_title = cy112_CD45pos_S61
!Sample_geo_accession = GSM3202391
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451104
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202392
!Sample_title = cy112_CD45pos_S7
!Sample_geo_accession = GSM3202392
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451103
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202393
!Sample_title = cy112_CD45neg_CD90neg_S181
!Sample_geo_accession = GSM3202393
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451102
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202394
!Sample_title = cy102_CD45pos_S233
!Sample_geo_accession = GSM3202394
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451101
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202395
!Sample_title = cy102_CD45neg_CD90neg_S318
!Sample_geo_accession = GSM3202395
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451100
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202396
!Sample_title = cy102_CD45neg_CD90neg_S360
!Sample_geo_accession = GSM3202396
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451099
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202397
!Sample_title = cy112_CD45pos_S41
!Sample_geo_accession = GSM3202397
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451098
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202398
!Sample_title = cy102_CD45neg_CD90neg_S316
!Sample_geo_accession = GSM3202398
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451097
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202399
!Sample_title = cy102_CD45neg_CD90neg_S372
!Sample_geo_accession = GSM3202399
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451096
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202400
!Sample_title = cy102_CD45neg_CD90neg_S298
!Sample_geo_accession = GSM3202400
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451095
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202401
!Sample_title = cy102_CD45pos_S249
!Sample_geo_accession = GSM3202401
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202402
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!Sample_geo_accession = GSM3202402
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3202403
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202407
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy102_CD45pos_S194
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202409
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451086
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202410
!Sample_title = cy102_CD45neg_CD90neg_S377
!Sample_geo_accession = GSM3202410
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451085
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202411
!Sample_title = cy102_CD45neg_CD90neg_S382
!Sample_geo_accession = GSM3202411
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451084
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202412
!Sample_title = cy102_CD45pos_S275
!Sample_geo_accession = GSM3202412
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451083
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202413
!Sample_title = cy112_CD45pos_S35
!Sample_geo_accession = GSM3202413
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451082
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^SAMPLE = GSM3202414
!Sample_title = cy102_CD45pos_S234
!Sample_geo_accession = GSM3202414
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451081
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202415
!Sample_title = cy102_CD45pos_S282
!Sample_geo_accession = GSM3202415
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451080
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202416
!Sample_title = cy102_CD45pos_S254
!Sample_geo_accession = GSM3202416
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = tumor-of-origin: Mel102
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451079
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202417
!Sample_title = cy102_CD45neg_CD90neg_S295
!Sample_geo_accession = GSM3202417
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451078
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202418
!Sample_title = cy112_CD45neg_CD90neg_S127
!Sample_geo_accession = GSM3202418
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451077
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202419
!Sample_title = cy102_CD45pos_S205
!Sample_geo_accession = GSM3202419
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451076
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202420
!Sample_title = cy112_CD45pos_S66
!Sample_geo_accession = GSM3202420
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451075
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^SAMPLE = GSM3202421
!Sample_title = cy102_CD45neg_CD90neg_S307
!Sample_geo_accession = GSM3202421
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_institute = Broad Institute
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451145
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^SAMPLE = GSM3202422
!Sample_title = cy102_CD45neg_CD90neg_S365
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202423
!Sample_title = cy102_CD45pos_S200
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451143
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^SAMPLE = GSM3202424
!Sample_title = cy102_CD45pos_S232
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451142
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202425
!Sample_title = cy102_CD45pos_S236
!Sample_geo_accession = GSM3202425
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202426
!Sample_title = cy112_CD45pos_S83
!Sample_geo_accession = GSM3202426
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451140
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451131
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202436
!Sample_title = cy102_CD45pos_S224
!Sample_geo_accession = GSM3202436
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451130
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202437
!Sample_title = cy112_CD45pos_S31
!Sample_geo_accession = GSM3202437
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451129
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202438
!Sample_title = cy112_CD45neg_CD90neg_S178
!Sample_geo_accession = GSM3202438
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451128
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202439
!Sample_title = cy102_CD45neg_CD90neg_S291
!Sample_geo_accession = GSM3202439
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451127
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202440
!Sample_title = cy102_CD45neg_CD90neg_S359
!Sample_geo_accession = GSM3202440
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451126
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202441
!Sample_title = cy112_CD45pos_S47
!Sample_geo_accession = GSM3202441
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451125
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202442
!Sample_title = cy102_CD45neg_CD90neg_S310
!Sample_geo_accession = GSM3202442
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451124
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202443
!Sample_title = cy102_CD45pos_S206
!Sample_geo_accession = GSM3202443
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451123
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202444
!Sample_title = cy112_CD45pos_S40
!Sample_geo_accession = GSM3202444
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451122
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202445
!Sample_title = cy102_CD45pos_S279
!Sample_geo_accession = GSM3202445
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451121
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202446
!Sample_title = cy102_CD45pos_S278
!Sample_geo_accession = GSM3202446
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451120
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^SAMPLE = GSM3202447
!Sample_title = cy102_CD45neg_CD90neg_S319
!Sample_geo_accession = GSM3202447
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451119
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202448
!Sample_title = cy102_CD45pos_S239
!Sample_geo_accession = GSM3202448
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3202449
!Sample_title = cy112_CD45pos_S69
!Sample_geo_accession = GSM3202449
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451059
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202450
!Sample_title = cy102_CD45neg_CD90neg_S301
!Sample_geo_accession = GSM3202450
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451058
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202451
!Sample_title = cy102_CD45neg_CD90neg_S371
!Sample_geo_accession = GSM3202451
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451057
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202452
!Sample_title = cy102_CD45pos_S219
!Sample_geo_accession = GSM3202452
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
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!Sample_title = cy102_CD45pos_S238
!Sample_geo_accession = GSM3202453
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451055
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^SAMPLE = GSM3202454
!Sample_title = cy102_CD45pos_S248
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202455
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202458
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202459
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202460
!Sample_title = cy102_CD45pos_S284
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202461
!Sample_title = cy102_CD45neg_CD90neg_S380
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451045
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202462
!Sample_title = cy102_CD45neg_CD90neg_S370
!Sample_geo_accession = GSM3202462
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451044
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202463
!Sample_title = cy112_CD45pos_S17
!Sample_geo_accession = GSM3202463
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451043
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^SAMPLE = GSM3202464
!Sample_title = cy102_CD45pos_S261
!Sample_geo_accession = GSM3202464
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451049
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^SAMPLE = GSM3202465
!Sample_title = cy102_CD45neg_CD90neg_S381
!Sample_geo_accession = GSM3202465
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451048
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^SAMPLE = GSM3202466
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202467
!Sample_title = cy112_CD45pos_S63
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451041
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^SAMPLE = GSM3202468
!Sample_title = cy102_CD45neg_CD90neg_S354
!Sample_geo_accession = GSM3202468
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451040
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^SAMPLE = GSM3202469
!Sample_title = cy112_CD45neg_CD90neg_S102
!Sample_geo_accession = GSM3202469
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451039
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202470
!Sample_title = cy102_CD45neg_CD90neg_S342
!Sample_geo_accession = GSM3202470
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451038
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202471
!Sample_title = cy102_CD45neg_CD90neg_S334
!Sample_geo_accession = GSM3202471
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451037
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202472
!Sample_title = cy112_CD45neg_CD90neg_S176
!Sample_geo_accession = GSM3202472
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451113
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202473
!Sample_title = cy102_CD45pos_S201
!Sample_geo_accession = GSM3202473
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451112
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202474
!Sample_title = cy102_CD45neg_CD90neg_S302
!Sample_geo_accession = GSM3202474
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451111
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202475
!Sample_title = cy112_CD45pos_S14
!Sample_geo_accession = GSM3202475
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451110
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202476
!Sample_title = cy102_CD45pos_S283
!Sample_geo_accession = GSM3202476
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451109
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202477
!Sample_title = cy102_CD45pos_S241
!Sample_geo_accession = GSM3202477
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451108
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202478
!Sample_title = cy102_CD45pos_S252
!Sample_geo_accession = GSM3202478
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451107
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202479
!Sample_title = cy102_CD45pos_S220
!Sample_geo_accession = GSM3202479
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451015
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202480
!Sample_title = cy102_CD45pos_S225
!Sample_geo_accession = GSM3202480
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451014
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202481
!Sample_title = cy102_CD45pos_S198
!Sample_geo_accession = GSM3202481
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451013
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202482
!Sample_title = cy102_CD45neg_CD90neg_S315
!Sample_geo_accession = GSM3202482
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451012
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202483
!Sample_title = cy102_CD45pos_S237
!Sample_geo_accession = GSM3202483
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451011
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202484
!Sample_title = cy112_CD45pos_S42
!Sample_geo_accession = GSM3202484
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451010
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202485
!Sample_title = cy102_CD45neg_CD90neg_S289
!Sample_geo_accession = GSM3202485
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451009
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202486
!Sample_title = cy102_CD45pos_S209
!Sample_geo_accession = GSM3202486
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451008
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202487
!Sample_title = cy102_CD45neg_CD90neg_S362
!Sample_geo_accession = GSM3202487
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451007
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3202488
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!Sample_geo_accession = GSM3202488
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202489
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!Sample_geo_accession = GSM3202489
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3202494
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451072
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202497
!Sample_title = cy112_CD45pos_S15
!Sample_geo_accession = GSM3202497
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451071
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202498
!Sample_title = cy102_CD45pos_S250
!Sample_geo_accession = GSM3202498
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451070
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202499
!Sample_title = cy102_CD45pos_S260
!Sample_geo_accession = GSM3202499
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451069
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202500
!Sample_title = cy102_CD45neg_CD90neg_S335
!Sample_geo_accession = GSM3202500
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451068
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202501
!Sample_title = cy102_CD45pos_S214
!Sample_geo_accession = GSM3202501
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451067
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202502
!Sample_title = cy102_CD45neg_CD90neg_S336
!Sample_geo_accession = GSM3202502
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451066
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202503
!Sample_title = cy102_CD45pos_S228
!Sample_geo_accession = GSM3202503
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451065
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202504
!Sample_title = cy102_CD45pos_S202
!Sample_geo_accession = GSM3202504
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451064
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202505
!Sample_title = cy102_CD45neg_CD90neg_S323
!Sample_geo_accession = GSM3202505
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451063
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202506
!Sample_title = cy102_CD45pos_S197
!Sample_geo_accession = GSM3202506
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451062
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202507
!Sample_title = cy112_CD45neg_CD90neg_S171_9
!Sample_geo_accession = GSM3202507
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451061
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^SAMPLE = GSM3202508
!Sample_title = cy102_CD45pos_S247
!Sample_geo_accession = GSM3202508
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451060
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202509
!Sample_title = cy102_CD45pos_S243
!Sample_geo_accession = GSM3202509
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202510
!Sample_title = cy112_CD45pos_S75
!Sample_geo_accession = GSM3202510
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451616
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202511
!Sample_title = cy102_CD45neg_CD90neg_S374
!Sample_geo_accession = GSM3202511
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451688
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202512
!Sample_title = cy112_CD45pos_S90
!Sample_geo_accession = GSM3202512
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451687
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202513
!Sample_title = cy112_CD45pos_S48
!Sample_geo_accession = GSM3202513
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3202520
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!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451332
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202523
!Sample_title = cy102_CD45neg_CD90neg_S341
!Sample_geo_accession = GSM3202523
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451331
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202524
!Sample_title = cy102_CD45neg_CD90neg_S361
!Sample_geo_accession = GSM3202524
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451330
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^SAMPLE = GSM3202525
!Sample_title = cy102_CD45pos_S265
!Sample_geo_accession = GSM3202525
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451329
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^SAMPLE = GSM3202526
!Sample_title = cy102_CD45pos_S229
!Sample_geo_accession = GSM3202526
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451328
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^SAMPLE = GSM3202527
!Sample_title = cy102_CD45neg_CD90neg_S383
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202528
!Sample_title = cy102_CD45pos_S226
!Sample_geo_accession = GSM3202528
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451326
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^SAMPLE = GSM3202529
!Sample_title = cy102_CD45neg_CD90neg_S368
!Sample_geo_accession = GSM3202529
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451325
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!Sample_data_row_count = 0
^SAMPLE = GSM3202530
!Sample_title = cy102_CD45neg_CD90neg_S375
!Sample_geo_accession = GSM3202530
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451399
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202531
!Sample_title = cy102_CD45neg_CD90neg_S366
!Sample_geo_accession = GSM3202531
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451398
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202532
!Sample_title = cy102_CD45neg_CD90neg_S369
!Sample_geo_accession = GSM3202532
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451397
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202533
!Sample_title = cy112_CD45pos_S25
!Sample_geo_accession = GSM3202533
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451396
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202534
!Sample_title = cy112_CD45pos_S19
!Sample_geo_accession = GSM3202534
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451395
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202535
!Sample_title = cy102_CD45pos_S246
!Sample_geo_accession = GSM3202535
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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^SAMPLE = GSM3202536
!Sample_title = cy102_CD45neg_CD90neg_S350
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451393
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^SAMPLE = GSM3202537
!Sample_title = cy102_CD45pos_S193
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451392
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202538
!Sample_title = cy112_CD45pos_S70
!Sample_geo_accession = GSM3202538
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451391
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202539
!Sample_title = cy102_CD45neg_CD90neg_S322
!Sample_geo_accession = GSM3202539
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451390
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
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!Sample_geo_accession = GSM3202540
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451389
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!Sample_title = cy102_CD45pos_S263
!Sample_geo_accession = GSM3202541
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202542
!Sample_title = cy102_CD45neg_CD90neg_S339
!Sample_geo_accession = GSM3202542
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy102_CD45pos_S285
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202544
!Sample_title = cy102_CD45neg_CD90neg_S349
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202546
!Sample_title = cy112_CD45pos_S95
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy102_CD45pos_S230
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy112_CD45pos_S53
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451381
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202549
!Sample_title = cy102_CD45pos_S270
!Sample_geo_accession = GSM3202549
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy102_CD45neg_CD90neg_S304
!Sample_geo_accession = GSM3202550
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202551
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3202553
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202554
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202555
!Sample_title = cy102_CD45pos_S242
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy102_CD45pos_S269
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy102_CD45pos_S218
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450914
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202558
!Sample_title = cy102_CD45neg_CD90neg_S306
!Sample_geo_accession = GSM3202558
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450910
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202559
!Sample_title = cy102_CD45pos_S210
!Sample_geo_accession = GSM3202559
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450909
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202560
!Sample_title = cy112_CD45neg_CD90neg_S149
!Sample_geo_accession = GSM3202560
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450908
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^SAMPLE = GSM3202561
!Sample_title = cy112_CD45pos_S10
!Sample_geo_accession = GSM3202561
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202562
!Sample_title = cy102_CD45pos_S255
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450906
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202563
!Sample_title = cy102_CD45neg_CD90neg_S325
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450905
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^SAMPLE = GSM3202564
!Sample_title = cy112_CD45pos_S43
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450904
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!Sample_data_row_count = 0
^SAMPLE = GSM3202565
!Sample_title = cy102_CD45neg_CD90neg_S367
!Sample_geo_accession = GSM3202565
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450903
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202566
!Sample_title = cy102_CD45pos_S273
!Sample_geo_accession = GSM3202566
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450902
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202567
!Sample_title = cy102_CD45neg_CD90neg_S292
!Sample_geo_accession = GSM3202567
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450901
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^SAMPLE = GSM3202568
!Sample_title = cy112_CD45pos_S52
!Sample_geo_accession = GSM3202568
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450900
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^SAMPLE = GSM3202569
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!Sample_geo_accession = GSM3202569
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202570
!Sample_title = cy112_CD45pos_S16
!Sample_geo_accession = GSM3202570
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202571
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202572
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202573
!Sample_title = cy112_CD45pos_S20
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202574
!Sample_title = cy102_CD45pos_S268
!Sample_geo_accession = GSM3202574
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202575
!Sample_title = cy112_CD45pos_S79
!Sample_geo_accession = GSM3202575
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450893
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202576
!Sample_title = cy112_CD45pos_S54
!Sample_geo_accession = GSM3202576
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450964
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^SAMPLE = GSM3202577
!Sample_title = cy102_CD45pos_S280
!Sample_geo_accession = GSM3202577
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202578
!Sample_title = cy112_CD45pos_S32
!Sample_geo_accession = GSM3202578
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy102_CD45pos_S213
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202580
!Sample_title = cy102_CD45neg_CD90neg_S296
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202581
!Sample_title = cy102_CD45pos_S227
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202582
!Sample_title = cy112_CD45pos_S64
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202583
!Sample_title = cy102_CD45neg_CD90neg_S373
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450837
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202584
!Sample_title = cy102_CD45neg_CD90neg_S347
!Sample_geo_accession = GSM3202584
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450843
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202585
!Sample_title = cy102_CD45pos_S215
!Sample_geo_accession = GSM3202585
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450842
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202586
!Sample_title = cy102_CD45neg_CD90neg_S353
!Sample_geo_accession = GSM3202586
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450841
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202587
!Sample_title = cy102_CD45pos_S203
!Sample_geo_accession = GSM3202587
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450840
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202588
!Sample_title = cy102_CD45neg_CD90neg_S355
!Sample_geo_accession = GSM3202588
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450836
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202589
!Sample_title = cy102_CD45neg_CD90neg_S352
!Sample_geo_accession = GSM3202589
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450835
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202590
!Sample_title = cy102_CD45neg_CD90neg_S309
!Sample_geo_accession = GSM3202590
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450834
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202591
!Sample_title = cy102_CD45neg_CD90neg_S305
!Sample_geo_accession = GSM3202591
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450833
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202592
!Sample_title = cy112_CD45neg_CD90neg_S129
!Sample_geo_accession = GSM3202592
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450832
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202593
!Sample_title = cy102_CD45pos_S258
!Sample_geo_accession = GSM3202593
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450831
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202594
!Sample_title = cy112_CD45pos_S92
!Sample_geo_accession = GSM3202594
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450830
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202595
!Sample_title = cy102_CD45pos_S266
!Sample_geo_accession = GSM3202595
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450829
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202596
!Sample_title = cy102_CD45neg_CD90neg_S346
!Sample_geo_accession = GSM3202596
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450828
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202597
!Sample_title = cy112_CD45pos_S1
!Sample_geo_accession = GSM3202597
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450892
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202598
!Sample_title = cy102_CD45neg_CD90neg_S294
!Sample_geo_accession = GSM3202598
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450891
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202599
!Sample_title = cy102_CD45neg_CD90neg_S329
!Sample_geo_accession = GSM3202599
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450890
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202600
!Sample_title = cy102_CD45pos_S264
!Sample_geo_accession = GSM3202600
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450889
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202601
!Sample_title = cy102_CD45neg_CD90neg_S303
!Sample_geo_accession = GSM3202601
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450888
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202602
!Sample_title = cy102_CD45neg_CD90neg_S333
!Sample_geo_accession = GSM3202602
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450887
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202603
!Sample_title = cy102_CD45pos_S277
!Sample_geo_accession = GSM3202603
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450886
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202604
!Sample_title = cy102_CD45pos_S257
!Sample_geo_accession = GSM3202604
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450885
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202605
!Sample_title = cy102_CD45pos_S231
!Sample_geo_accession = GSM3202605
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450884
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202606
!Sample_title = cy112_CD45neg_CD90neg_S132
!Sample_geo_accession = GSM3202606
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450883
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202607
!Sample_title = cy102_CD45neg_CD90neg_S297
!Sample_geo_accession = GSM3202607
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: post.treatment
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!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450882
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202608
!Sample_title = cy102_CD45neg_CD90neg_S326
!Sample_geo_accession = GSM3202608
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450881
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202609
!Sample_title = cy102_CD45pos_S251
!Sample_geo_accession = GSM3202609
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel102
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450880
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202610
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!Sample_geo_accession = GSM3202610
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy106_CD45pos_S277
!Sample_geo_accession = GSM3202611
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy106_CD45pos_S199
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy105_CD45pos_calceinpos_S21
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_title = cy106_CD45neg_CD90neg_S363_10
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy106_CD45pos_S239
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202618
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451147
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202619
!Sample_title = cy105_CD45pos_calceinpos_S94
!Sample_geo_accession = GSM3202619
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451146
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202620
!Sample_title = cy106_CD45neg_CD90neg_S309_11
!Sample_geo_accession = GSM3202620
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451218
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202621
!Sample_title = cy106_CD45neg_CD90neg_S378_12
!Sample_geo_accession = GSM3202621
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451217
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202622
!Sample_title = cy106_CD45pos_S263
!Sample_geo_accession = GSM3202622
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451216
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202623
!Sample_title = cy106_CD45pos_S227
!Sample_geo_accession = GSM3202623
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451215
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202624
!Sample_title = cy106_CD45neg_CD90neg_S333
!Sample_geo_accession = GSM3202624
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451214
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202625
!Sample_title = cy105_CD45pos_calceinpos_S88
!Sample_geo_accession = GSM3202625
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451213
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202626
!Sample_title = cy105_CD45pos_calceinpos_S80
!Sample_geo_accession = GSM3202626
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451212
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202627
!Sample_title = cy106_CD45pos_S194
!Sample_geo_accession = GSM3202627
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451211
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202628
!Sample_title = cy106_CD45neg_CD90neg_S304
!Sample_geo_accession = GSM3202628
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451210
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy105_CD45pos_calceinpos_S54
!Sample_geo_accession = GSM3202629
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451209
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^SAMPLE = GSM3202630
!Sample_title = cy105_CD45pos_calceinpos_S15
!Sample_geo_accession = GSM3202630
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202631
!Sample_title = cy105_CD45neg_calceinpos_S152
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202632
!Sample_title = cy105_CD45pos_calceinpos_S16
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451206
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^SAMPLE = GSM3202633
!Sample_title = cy106_CD45pos_S213
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451205
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202634
!Sample_title = cy106_CD45pos_S280
!Sample_geo_accession = GSM3202634
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202635
!Sample_title = cy105_CD45pos_calceinpos_S90
!Sample_geo_accession = GSM3202635
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3202641
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^SAMPLE = GSM3202642
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202644
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451194
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202645
!Sample_title = cy105_CD45pos_calceinpos_S4
!Sample_geo_accession = GSM3202645
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: NK
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451193
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202646
!Sample_title = cy106_CD45neg_CD90neg_S330
!Sample_geo_accession = GSM3202646
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451192
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202647
!Sample_title = cy106_CD45neg_CD90neg_S316
!Sample_geo_accession = GSM3202647
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451191
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202648
!Sample_title = cy105_CD45pos_calceinpos_S75
!Sample_geo_accession = GSM3202648
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451190
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202649
!Sample_title = cy105_CD45pos_calceinpos_S49
!Sample_geo_accession = GSM3202649
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451189
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202650
!Sample_title = cy105_CD45pos_calceinpos_S3
!Sample_geo_accession = GSM3202650
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451188
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202651
!Sample_title = cy106_CD45pos_S261
!Sample_geo_accession = GSM3202651
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451187
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202652
!Sample_title = cy105_CD45pos_calceinpos_S76
!Sample_geo_accession = GSM3202652
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451186
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202653
!Sample_title = cy106_CD45pos_S237
!Sample_geo_accession = GSM3202653
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451185
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202654
!Sample_title = cy105_CD45pos_calceinpos_S95
!Sample_geo_accession = GSM3202654
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451184
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202655
!Sample_title = cy105_CD45pos_calceinpos_S45
!Sample_geo_accession = GSM3202655
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451183
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202656
!Sample_title = cy105_CD45pos_calceinpos_S6
!Sample_geo_accession = GSM3202656
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451182
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202657
!Sample_title = cy106_CD45pos_S256
!Sample_geo_accession = GSM3202657
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451255
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202658
!Sample_title = cy105_CD45pos_calceinpos_S33
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451254
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202659
!Sample_title = cy105_CD45pos_calceinpos_S89
!Sample_geo_accession = GSM3202659
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451253
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202660
!Sample_title = cy105_CD45pos_calceinpos_S93
!Sample_geo_accession = GSM3202660
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451252
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202661
!Sample_title = cy106_CD45neg_CD90neg_S292
!Sample_geo_accession = GSM3202661
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202670
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451524
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202671
!Sample_title = cy105_CD45pos_calceinpos_S14
!Sample_geo_accession = GSM3202671
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451523
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202672
!Sample_title = cy105_CD45neg_calceinpos_S190
!Sample_geo_accession = GSM3202672
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451522
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202673
!Sample_title = cy105_CD45pos_calceinpos_S92
!Sample_geo_accession = GSM3202673
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451521
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202674
!Sample_title = cy105_CD45pos_calceinpos_S23
!Sample_geo_accession = GSM3202674
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451520
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202675
!Sample_title = cy105_CD45pos_calceinpos_S53
!Sample_geo_accession = GSM3202675
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451519
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202676
!Sample_title = cy106_CD45pos_S197
!Sample_geo_accession = GSM3202676
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451518
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202677
!Sample_title = cy105_CD45neg_calceinpos_S132
!Sample_geo_accession = GSM3202677
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Endo.
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451517
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202678
!Sample_title = cy106_CD45neg_CD90neg_S336
!Sample_geo_accession = GSM3202678
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451516
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202679
!Sample_title = cy106_CD45pos_S285
!Sample_geo_accession = GSM3202679
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451515
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202680
!Sample_title = cy106_CD45pos_S231
!Sample_geo_accession = GSM3202680
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451514
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202681
!Sample_title = cy105_CD45pos_calceinpos_S69
!Sample_geo_accession = GSM3202681
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_department = Klarman Cell Observatory
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202682
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!Sample_geo_accession = GSM3202682
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451512
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^SAMPLE = GSM3202683
!Sample_title = cy105_CD45pos_calceinpos_S27
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202684
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202685
!Sample_title = cy105_CD45pos_calceinpos_S60
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_data_row_count = 0
^SAMPLE = GSM3202686
!Sample_title = cy105_CD45pos_calceinpos_S8
!Sample_geo_accession = GSM3202686
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202687
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202688
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!Sample_geo_accession = GSM3202688
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451569
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202697
!Sample_title = cy105_CD45pos_calceinpos_S19
!Sample_geo_accession = GSM3202697
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451568
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202698
!Sample_title = cy106_CD45neg_CD90neg_S300
!Sample_geo_accession = GSM3202698
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451567
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202699
!Sample_title = cy105_CD45pos_calceinpos_S25
!Sample_geo_accession = GSM3202699
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451566
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202700
!Sample_title = cy105_CD45pos_calceinpos_S91
!Sample_geo_accession = GSM3202700
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451606
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202701
!Sample_title = cy106_CD45pos_S260
!Sample_geo_accession = GSM3202701
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451605
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202702
!Sample_title = cy105_CD45pos_calceinpos_S59
!Sample_geo_accession = GSM3202702
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451600
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202703
!Sample_title = cy106_CD45pos_S283
!Sample_geo_accession = GSM3202703
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451599
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202704
!Sample_title = cy105_CD45pos_calceinpos_S78
!Sample_geo_accession = GSM3202704
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451604
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202705
!Sample_title = cy105_CD45pos_calceinpos_S7
!Sample_geo_accession = GSM3202705
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451603
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202706
!Sample_title = cy106_CD45pos_S254
!Sample_geo_accession = GSM3202706
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3202710
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202711
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202712
!Sample_title = cy106_CD45neg_CD90neg_S313
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451584
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202723
!Sample_title = cy106_CD45neg_CD90neg_S354
!Sample_geo_accession = GSM3202723
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451583
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202724
!Sample_title = cy105_CD45pos_calceinpos_S40
!Sample_geo_accession = GSM3202724
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel105
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451582
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202725
!Sample_title = cy106_CD45pos_S282
!Sample_geo_accession = GSM3202725
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451581
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202726
!Sample_title = cy105_CD45pos_calceinpos_S5
!Sample_geo_accession = GSM3202726
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451654
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202727
!Sample_title = cy105_CD45pos_calceinpos_S96
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451653
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202728
!Sample_title = cy106_CD45pos_S230
!Sample_geo_accession = GSM3202728
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451651
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202729
!Sample_title = cy105_CD45neg_calceinpos_S191
!Sample_geo_accession = GSM3202729
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451283
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202730
!Sample_title = cy105_CD45pos_calceinpos_S50
!Sample_geo_accession = GSM3202730
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451282
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202731
!Sample_title = cy106_CD45pos_S248
!Sample_geo_accession = GSM3202731
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451281
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202732
!Sample_title = cy105_CD45pos_calceinpos_S52
!Sample_geo_accession = GSM3202732
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451280
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202733
!Sample_title = cy105_CD45neg_calceinpos_S131
!Sample_geo_accession = GSM3202733
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cell type: Undetermined
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451279
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202734
!Sample_title = cy105_CD45pos_calceinpos_S39
!Sample_geo_accession = GSM3202734
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451652
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202735
!Sample_title = cy105_CD45pos_calceinpos_S17
!Sample_geo_accession = GSM3202735
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202736
!Sample_title = cy106_CD45pos_S264
!Sample_geo_accession = GSM3202736
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451277
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202737
!Sample_title = cy105_CD45pos_calceinpos_S87
!Sample_geo_accession = GSM3202737
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451276
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202738
!Sample_title = cy105_CD45pos_calceinpos_S29
!Sample_geo_accession = GSM3202738
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451275
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202739
!Sample_title = cy105_CD45pos_calceinpos_S51
!Sample_geo_accession = GSM3202739
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
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!Sample_geo_accession = GSM3202740
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3202745
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3202747
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451265
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202749
!Sample_title = cy106_CD45pos_S215
!Sample_geo_accession = GSM3202749
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451264
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202750
!Sample_title = cy106_CD45pos_S193
!Sample_geo_accession = GSM3202750
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451263
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202751
!Sample_title = cy105_CD45pos_calceinpos_S70
!Sample_geo_accession = GSM3202751
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451262
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202752
!Sample_title = cy106_CD45pos_S262
!Sample_geo_accession = GSM3202752
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451261
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202753
!Sample_title = cy106_CD45neg_CD90neg_S306_17
!Sample_geo_accession = GSM3202753
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451260
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202754
!Sample_title = cy106_CD45pos_S249
!Sample_geo_accession = GSM3202754
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451259
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202755
!Sample_title = cy106_CD45pos_S251
!Sample_geo_accession = GSM3202755
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451258
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^SAMPLE = GSM3202756
!Sample_title = cy106_CD45pos_S250
!Sample_geo_accession = GSM3202756
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451257
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202757
!Sample_title = cy106_CD45pos_S201
!Sample_geo_accession = GSM3202757
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451256
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202758
!Sample_title = cy105_CD45pos_calceinpos_S30
!Sample_geo_accession = GSM3202758
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451324
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202759
!Sample_title = cy106_CD45pos_S244
!Sample_geo_accession = GSM3202759
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451323
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^SAMPLE = GSM3202760
!Sample_title = cy105_CD45pos_calceinpos_S85
!Sample_geo_accession = GSM3202760
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451242
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202761
!Sample_title = cy106_CD45neg_CD90neg_S295
!Sample_geo_accession = GSM3202761
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451241
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202762
!Sample_title = cy105_CD45pos_calceinpos_S55
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451240
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202763
!Sample_title = cy105_CD45pos_calceinpos_S83
!Sample_geo_accession = GSM3202763
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451239
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202764
!Sample_title = cy105_CD45pos_calceinpos_S62
!Sample_geo_accession = GSM3202764
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202765
!Sample_title = cy106_CD45neg_CD90neg_S368
!Sample_geo_accession = GSM3202765
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451228
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202775
!Sample_title = cy98_CD45pos_1_S231
!Sample_geo_accession = GSM3202775
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451227
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202776
!Sample_title = cy98_CD45pos_2_S319
!Sample_geo_accession = GSM3202776
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel98
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: NK
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451226
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202777
!Sample_title = cy112_CD45neg_CD90neg_S112
!Sample_geo_accession = GSM3202777
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451225
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202778
!Sample_title = cy110_CD45neg_CD90neg_S11
!Sample_geo_accession = GSM3202778
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451224
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202779
!Sample_title = cy110_CD45neg_CD90neg_S29
!Sample_geo_accession = GSM3202779
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451223
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202780
!Sample_title = cy112_CD45neg_CD90neg_S137
!Sample_geo_accession = GSM3202780
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451222
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202781
!Sample_title = cy98_CD45pos_2_S347
!Sample_geo_accession = GSM3202781
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451221
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202782
!Sample_title = cy110_CD45neg_CD90neg_S45
!Sample_geo_accession = GSM3202782
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451220
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202783
!Sample_title = cy98_CD45pos_2_S326
!Sample_geo_accession = GSM3202783
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451412
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202801
!Sample_title = cy98_CD45pos_2_S295
!Sample_geo_accession = GSM3202801
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel98
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451411
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202802
!Sample_title = cy98_CD45pos_1_S236
!Sample_geo_accession = GSM3202802
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451410
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202803
!Sample_title = cy98_CD45pos_1_S208
!Sample_geo_accession = GSM3202803
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451409
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202804
!Sample_title = cy112_CD45neg_CD90neg_S121
!Sample_geo_accession = GSM3202804
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451408
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202805
!Sample_title = cy112_CD45neg_CD90neg_S143
!Sample_geo_accession = GSM3202805
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451407
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202806
!Sample_title = cy110_CD45neg_CD90neg_S52
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451406
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202807
!Sample_title = cy98_CD45pos_2_S345
!Sample_geo_accession = GSM3202807
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3202808
!Sample_title = cy110_CD45neg_CD90neg_S61
!Sample_geo_accession = GSM3202808
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451404
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202809
!Sample_title = cy98_CD45pos_2_S375
!Sample_geo_accession = GSM3202809
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451403
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^SAMPLE = GSM3202810
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!Sample_geo_accession = GSM3202810
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202816
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3202826
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451373
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202827
!Sample_title = cy110_CD45neg_CD90neg_S78
!Sample_geo_accession = GSM3202827
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451369
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202828
!Sample_title = cy98_CD45pos_2_S323
!Sample_geo_accession = GSM3202828
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451368
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^SAMPLE = GSM3202829
!Sample_title = cy98_CD45pos_1_S216
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202830
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202831
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202832
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202833
!Sample_title = cy98_CD45pos_2_S301
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202834
!Sample_title = cy98_CD45pos_1_S219
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451362
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202835
!Sample_title = cy110_CD45neg_CD90neg_S62
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451434
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy98_CD45pos_1_S204
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202842
!Sample_title = cy112_CD45neg_CD90neg_S170
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451359
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202853
!Sample_title = cy110_CD45neg_CD90neg_S17
!Sample_geo_accession = GSM3202853
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451358
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202854
!Sample_title = cy98_CD45pos_2_S297
!Sample_geo_accession = GSM3202854
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451357
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^SAMPLE = GSM3202855
!Sample_title = cy98_CD45pos_1_S215
!Sample_geo_accession = GSM3202855
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451356
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^SAMPLE = GSM3202856
!Sample_title = cy98_CD45pos_2_S314
!Sample_geo_accession = GSM3202856
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202857
!Sample_title = cy98_CD45pos_2_S380
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202858
!Sample_title = cy98_CD45pos_1_S195
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202859
!Sample_title = cy98_CD45pos_2_S356
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202860
!Sample_title = cy98_CD45pos_1_S213
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451351
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202861
!Sample_title = cy98_CD45pos_2_S307
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3202867
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202868
!Sample_title = cy98_CD45pos_2_S296
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452703
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202879
!Sample_title = cy112_CD45neg_CD90neg_S103
!Sample_geo_accession = GSM3202879
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel112
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452702
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202880
!Sample_title = cy98_CD45pos_2_S346
!Sample_geo_accession = GSM3202880
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452701
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202881
!Sample_title = cy98_CD45pos_2_S367
!Sample_geo_accession = GSM3202881
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452700
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202882
!Sample_title = cy112_CD45neg_CD90neg_S97
!Sample_geo_accession = GSM3202882
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452699
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202883
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202884
!Sample_title = cy98_CD45pos_2_S350
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202885
!Sample_title = cy98_CD45pos_2_S373
!Sample_geo_accession = GSM3202885
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202886
!Sample_title = cy98_CD45pos_1_S211
!Sample_geo_accession = GSM3202886
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452695
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202887
!Sample_title = cy98_CD45pos_2_S363
!Sample_geo_accession = GSM3202887
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452694
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^SAMPLE = GSM3202888
!Sample_title = cy98_CD45pos_1_S214
!Sample_geo_accession = GSM3202888
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202889
!Sample_title = cy110_CD45neg_CD90neg_S50
!Sample_geo_accession = GSM3202889
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202891
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202892
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202893
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202894
!Sample_title = cy98_CD45pos_1_S196
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452748
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202905
!Sample_title = cy98_CD45pos_2_S355
!Sample_geo_accession = GSM3202905
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452747
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^SAMPLE = GSM3202906
!Sample_title = cy98_CD45pos_2_S383
!Sample_geo_accession = GSM3202906
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202907
!Sample_title = cy98_CD45pos_2_S368
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202908
!Sample_title = cy98_CD45pos_1_S230
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202909
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202910
!Sample_title = cy98_CD45pos_1_S193
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202911
!Sample_title = cy98_CD45pos_1_S234
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202912
!Sample_title = cy98_CD45pos_2_S372
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451645
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202913
!Sample_title = cy110_CD45neg_CD90neg_S96
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451644
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!Sample_series_id = GSE115978
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!Sample_title = cy98_CD45pos_2_S340
!Sample_geo_accession = GSM3202914
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy98_CD45pos_2_S364
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy98_CD45pos_1_S207
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202919
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202920
!Sample_title = cy98_CD45pos_2_S333
!Sample_geo_accession = GSM3202920
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy98_CD45pos_2_S291
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451624
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202931
!Sample_title = cy110_CD45pos_S331
!Sample_geo_accession = GSM3202931
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451623
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202932
!Sample_title = cy110_CD45neg_CD90neg_S184
!Sample_geo_accession = GSM3202932
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451622
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202933
!Sample_title = cy103_CD45neg_CD90neg_S68
!Sample_geo_accession = GSM3202933
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451621
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202934
!Sample_title = cy103_CD45neg_CD90neg_S16
!Sample_geo_accession = GSM3202934
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451620
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202935
!Sample_title = cy110_CD45pos_S297
!Sample_geo_accession = GSM3202935
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451619
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202936
!Sample_title = cy103_CD45pos_S282
!Sample_geo_accession = GSM3202936
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451618
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202937
!Sample_title = cy103_CD45neg_CD90neg_S18
!Sample_geo_accession = GSM3202937
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451679
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202938
!Sample_title = cy110_CD45neg_CD90neg_S190
!Sample_geo_accession = GSM3202938
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451678
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202939
!Sample_title = cy110_CD45pos_S342
!Sample_geo_accession = GSM3202939
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451677
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202940
!Sample_title = cy110_CD45pos_S329
!Sample_geo_accession = GSM3202940
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451676
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202941
!Sample_title = cy103_CD45pos_S224
!Sample_geo_accession = GSM3202941
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451675
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^SAMPLE = GSM3202942
!Sample_title = cy110_CD45neg_CD90neg_S120
!Sample_geo_accession = GSM3202942
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451674
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202943
!Sample_title = cy103_CD45neg_CD90neg_S64
!Sample_geo_accession = GSM3202943
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202944
!Sample_title = cy110_CD45pos_S308
!Sample_geo_accession = GSM3202944
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451672
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202945
!Sample_title = cy103_CD45pos_S195
!Sample_geo_accession = GSM3202945
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451671
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202946
!Sample_title = cy103_CD45neg_CD90neg_S1
!Sample_geo_accession = GSM3202946
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451670
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202947
!Sample_title = cy103_CD45neg_CD90neg_S30
!Sample_geo_accession = GSM3202947
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy110_CD45pos_S358
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202954
!Sample_title = cy110_CD45pos_S332
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^SAMPLE = GSM3202955
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202956
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451563
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202957
!Sample_title = cy103_CD45pos_S265
!Sample_geo_accession = GSM3202957
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451562
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202958
!Sample_title = cy103_CD45neg_CD90neg_S77
!Sample_geo_accession = GSM3202958
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451561
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202959
!Sample_title = cy103_CD45neg_CD90neg_S13
!Sample_geo_accession = GSM3202959
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451560
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202960
!Sample_title = cy103_CD45pos_S196
!Sample_geo_accession = GSM3202960
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451559
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202961
!Sample_title = cy103_CD45pos_S268
!Sample_geo_accession = GSM3202961
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202962
!Sample_title = cy103_CD45neg_CD90neg_S27
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451557
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!Sample_data_row_count = 0
^SAMPLE = GSM3202963
!Sample_title = cy103_CD45neg_CD90neg_S35
!Sample_geo_accession = GSM3202963
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451556
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202964
!Sample_title = cy110_CD45pos_S336
!Sample_geo_accession = GSM3202964
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451555
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202965
!Sample_title = cy103_CD45pos_S267
!Sample_geo_accession = GSM3202965
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451554
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202966
!Sample_title = cy110_CD45neg_CD90neg_S115
!Sample_geo_accession = GSM3202966
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451553
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202967
!Sample_title = cy110_CD45pos_S352
!Sample_geo_accession = GSM3202967
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451552
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202968
!Sample_title = cy103_CD45neg_CD90neg_S45
!Sample_geo_accession = GSM3202968
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451551
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202969
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!Sample_geo_accession = GSM3202969
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3202970
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451549
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^SAMPLE = GSM3202971
!Sample_title = cy110_CD45pos_S303
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451548
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3202972
!Sample_title = cy103_CD45pos_S253
!Sample_geo_accession = GSM3202972
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451547
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^SAMPLE = GSM3202973
!Sample_title = cy110_CD45pos_S339
!Sample_geo_accession = GSM3202973
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = tumor-of-origin: Mel110
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_row_count = 0
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!Sample_geo_accession = GSM3202974
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451545
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^SAMPLE = GSM3202975
!Sample_title = cy103_CD45pos_S245
!Sample_geo_accession = GSM3202975
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202976
!Sample_title = cy103_CD45pos_S260
!Sample_geo_accession = GSM3202976
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy110_CD45neg_CD90neg_S117
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202978
!Sample_title = cy110_CD45pos_S363
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202979
!Sample_title = cy110_CD45pos_S292
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202980
!Sample_title = cy103_CD45pos_S199
!Sample_geo_accession = GSM3202980
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3202981
!Sample_title = cy103_CD45pos_S230
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202982
!Sample_title = cy103_CD45pos_S249
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451608
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3202983
!Sample_title = cy110_CD45pos_S326
!Sample_geo_accession = GSM3202983
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy103_CD45pos_S250
!Sample_geo_accession = GSM3202984
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy103_CD45pos_S248
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202989
!Sample_title = cy110_CD45pos_S370
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3202990
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202991
!Sample_title = cy110_CD45neg_CD90neg_S128
!Sample_geo_accession = GSM3202991
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452679
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3202992
!Sample_title = cy103_CD45neg_CD90neg_S87
!Sample_geo_accession = GSM3202992
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452678
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!Sample_geo_accession = GSM3202993
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202994
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!Sample_geo_accession = GSM3202994
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202995
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202996
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!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202997
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3202998
!Sample_title = cy110_CD45neg_CD90neg_S97
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3202999
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203000
!Sample_title = cy103_CD45neg_CD90neg_S7
!Sample_geo_accession = GSM3203000
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452670
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203001
!Sample_title = cy103_CD45neg_CD90neg_S49
!Sample_geo_accession = GSM3203001
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452669
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^SAMPLE = GSM3203002
!Sample_title = cy103_CD45neg_CD90neg_S58
!Sample_geo_accession = GSM3203002
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203003
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy110_CD45pos_S290
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203005
!Sample_title = cy103_CD45pos_S238
!Sample_geo_accession = GSM3203005
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203006
!Sample_title = cy103_CD45pos_S209
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203007
!Sample_title = cy103_CD45pos_S228
!Sample_geo_accession = GSM3203007
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203008
!Sample_title = cy110_CD45pos_S291
!Sample_geo_accession = GSM3203008
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451659
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203018
!Sample_title = cy110_CD45neg_CD90neg_S110
!Sample_geo_accession = GSM3203018
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451658
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203019
!Sample_title = cy103_CD45pos_S276
!Sample_geo_accession = GSM3203019
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451657
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203020
!Sample_title = cy103_CD45neg_CD90neg_S9
!Sample_geo_accession = GSM3203020
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451656
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203021
!Sample_title = cy103_CD45neg_CD90neg_S61
!Sample_geo_accession = GSM3203021
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451655
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203022
!Sample_title = cy103_CD45pos_S235
!Sample_geo_accession = GSM3203022
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451723
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203023
!Sample_title = cy103_CD45neg_CD90neg_S23
!Sample_geo_accession = GSM3203023
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451722
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203024
!Sample_title = cy103_CD45pos_S252
!Sample_geo_accession = GSM3203024
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451721
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203025
!Sample_title = cy110_CD45pos_S296
!Sample_geo_accession = GSM3203025
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451720
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203026
!Sample_title = cy103_CD45neg_CD90neg_S78
!Sample_geo_accession = GSM3203026
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451719
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203027
!Sample_title = cy103_CD45pos_S258
!Sample_geo_accession = GSM3203027
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451718
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203028
!Sample_title = cy110_CD45pos_S317
!Sample_geo_accession = GSM3203028
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451717
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203029
!Sample_title = cy110_CD45pos_S375
!Sample_geo_accession = GSM3203029
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451716
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203030
!Sample_title = cy110_CD45pos_S307
!Sample_geo_accession = GSM3203030
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451715
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203031
!Sample_title = cy110_CD45neg_CD90neg_S153
!Sample_geo_accession = GSM3203031
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451714
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203032
!Sample_title = cy103_CD45pos_S251
!Sample_geo_accession = GSM3203032
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451713
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203033
!Sample_title = cy103_CD45neg_CD90neg_S95
!Sample_geo_accession = GSM3203033
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451706
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203034
!Sample_title = cy103_CD45pos_S274
!Sample_geo_accession = GSM3203034
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451712
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!Sample_geo_accession = GSM3203035
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203043
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451702
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203044
!Sample_title = cy110_CD45neg_CD90neg_S182
!Sample_geo_accession = GSM3203044
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452656
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^SAMPLE = GSM3203045
!Sample_title = cy103_CD45pos_S226
!Sample_geo_accession = GSM3203045
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203046
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203047
!Sample_title = cy103_CD45neg_CD90neg_S80
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203048
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203049
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203050
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy103_CD45pos_S218
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452649
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^SAMPLE = GSM3203052
!Sample_title = cy103_CD45pos_S242
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452648
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203053
!Sample_title = cy110_CD45neg_CD90neg_S121
!Sample_geo_accession = GSM3203053
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452647
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203054
!Sample_title = cy110_CD45pos_S294
!Sample_geo_accession = GSM3203054
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452646
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3203055
!Sample_title = cy103_CD45pos_S233
!Sample_geo_accession = GSM3203055
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452645
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3203056
!Sample_title = cy103_CD45neg_CD90neg_S43
!Sample_geo_accession = GSM3203056
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452644
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3203057
!Sample_title = cy110_CD45neg_CD90neg_S162
!Sample_geo_accession = GSM3203057
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452643
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203058
!Sample_title = cy103_CD45pos_S203
!Sample_geo_accession = GSM3203058
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452642
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203059
!Sample_title = cy103_CD45neg_CD90neg_S63
!Sample_geo_accession = GSM3203059
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452641
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203060
!Sample_title = cy110_CD45neg_CD90neg_S165
!Sample_geo_accession = GSM3203060
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452715
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452714
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^SAMPLE = GSM3203062
!Sample_title = cy110_CD45neg_CD90neg_S168
!Sample_geo_accession = GSM3203062
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203063
!Sample_title = cy110_CD45neg_CD90neg_S139
!Sample_geo_accession = GSM3203063
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy110_CD45pos_S293
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy103_CD45pos_S234
!Sample_geo_accession = GSM3203065
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203066
!Sample_title = cy110_CD45neg_CD90neg_S106
!Sample_geo_accession = GSM3203066
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203067
!Sample_title = cy103_CD45pos_S279
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203068
!Sample_title = cy110_CD45neg_CD90neg_S138
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203069
!Sample_title = cy103_CD45pos_S283
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452709
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203070
!Sample_title = cy103_CD45neg_CD90neg_S69
!Sample_geo_accession = GSM3203070
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203071
!Sample_title = cy103_CD45pos_S217
!Sample_geo_accession = GSM3203071
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203073
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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^SAMPLE = GSM3203075
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203076
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203077
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203078
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452853
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203079
!Sample_title = cy103_CD45pos_S205
!Sample_geo_accession = GSM3203079
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452852
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203080
!Sample_title = cy103_CD45pos_S272
!Sample_geo_accession = GSM3203080
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452851
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203081
!Sample_title = cy103_CD45pos_S246
!Sample_geo_accession = GSM3203081
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452850
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^SAMPLE = GSM3203082
!Sample_title = cy110_CD45pos_S289
!Sample_geo_accession = GSM3203082
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452849
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^SAMPLE = GSM3203083
!Sample_title = cy110_CD45pos_S298
!Sample_geo_accession = GSM3203083
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203084
!Sample_title = cy103_CD45pos_S236
!Sample_geo_accession = GSM3203084
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452847
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203085
!Sample_title = cy110_CD45pos_S318
!Sample_geo_accession = GSM3203085
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452846
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^SAMPLE = GSM3203086
!Sample_title = cy103_CD45pos_S241
!Sample_geo_accession = GSM3203086
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452845
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203087
!Sample_title = cy103_CD45neg_CD90neg_S72
!Sample_geo_accession = GSM3203087
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452844
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203088
!Sample_title = cy103_CD45pos_S197
!Sample_geo_accession = GSM3203088
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452843
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203089
!Sample_title = cy103_CD45pos_S219
!Sample_geo_accession = GSM3203089
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452842
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203090
!Sample_title = cy103_CD45pos_S277
!Sample_geo_accession = GSM3203090
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452841
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203091
!Sample_title = cy110_CD45pos_S355
!Sample_geo_accession = GSM3203091
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452840
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^SAMPLE = GSM3203092
!Sample_title = cy110_CD45neg_CD90neg_S161
!Sample_geo_accession = GSM3203092
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452839
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3203093
!Sample_title = cy103_CD45neg_CD90neg_S56
!Sample_geo_accession = GSM3203093
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452838
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3203094
!Sample_title = cy110_CD45pos_S379
!Sample_geo_accession = GSM3203094
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452837
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203095
!Sample_title = cy103_CD45pos_S256
!Sample_geo_accession = GSM3203095
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = tumor-of-origin: Mel103
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!Sample_characteristics_ch1 = cell type: B.cell
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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^SAMPLE = GSM3203096
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203097
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3203103
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203104
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452906
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203105
!Sample_title = cy110_CD45pos_S302
!Sample_geo_accession = GSM3203105
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452905
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203106
!Sample_title = cy110_CD45pos_S310
!Sample_geo_accession = GSM3203106
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel110
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452904
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203107
!Sample_title = cy103_CD45pos_S213
!Sample_geo_accession = GSM3203107
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452903
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203108
!Sample_title = cy103_CD45neg_CD90neg_S33
!Sample_geo_accession = GSM3203108
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452902
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203109
!Sample_title = cy110_CD45pos_S330
!Sample_geo_accession = GSM3203109
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452901
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3203110
!Sample_title = cy110_CD45pos_S376
!Sample_geo_accession = GSM3203110
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452900
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203111
!Sample_title = cy103_CD45pos_S200
!Sample_geo_accession = GSM3203111
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452899
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203112
!Sample_title = cy110_CD45neg_CD90neg_S140
!Sample_geo_accession = GSM3203112
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452898
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203113
!Sample_title = cy110_CD45neg_CD90neg_S169
!Sample_geo_accession = GSM3203113
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452897
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203114
!Sample_title = cy110_CD45neg_CD90neg_S107
!Sample_geo_accession = GSM3203114
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452896
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!Sample_title = cy103_CD45neg_CD90neg_S75
!Sample_geo_accession = GSM3203115
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203116
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203117
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203118
!Sample_title = cy103_CD45neg_CD90neg_S4
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203119
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203120
!Sample_title = cy103_CD45neg_CD90neg_S89
!Sample_geo_accession = GSM3203120
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203123
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203128
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203129
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203130
!Sample_title = cy103_CD45neg_CD90neg_S90
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452946
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203131
!Sample_title = cy110_CD45neg_CD90neg_S189
!Sample_geo_accession = GSM3203131
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452945
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203132
!Sample_title = cy103_CD45pos_S262
!Sample_geo_accession = GSM3203132
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452944
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!Sample_title = cy103_CD45neg_CD90neg_S37
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203134
!Sample_title = cy103_CD45pos_S201
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203135
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203136
!Sample_title = cy103_CD45neg_CD90neg_S36
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203137
!Sample_title = cy103_CD45pos_S243
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203138
!Sample_title = cy103_CD45neg_CD90neg_S32
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451697
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203139
!Sample_title = cy103_CD45pos_S194
!Sample_geo_accession = GSM3203139
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451696
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203140
!Sample_title = cy103_CD45pos_S232
!Sample_geo_accession = GSM3203140
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451695
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203141
!Sample_title = cy110_CD45pos_S337
!Sample_geo_accession = GSM3203141
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451694
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203142
!Sample_title = cy103_CD45pos_S198
!Sample_geo_accession = GSM3203142
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451693
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203143
!Sample_title = cy103_CD45pos_S259
!Sample_geo_accession = GSM3203143
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451692
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^SAMPLE = GSM3203144
!Sample_title = cy103_CD45neg_CD90neg_S39
!Sample_geo_accession = GSM3203144
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451691
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203145
!Sample_title = cy103_CD45pos_S257
!Sample_geo_accession = GSM3203145
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451690
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203146
!Sample_title = cy103_CD45pos_S286
!Sample_geo_accession = GSM3203146
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel103
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451689
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203147
!Sample_title = cy103_CD45neg_CD90neg_S15
!Sample_geo_accession = GSM3203147
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3203149
!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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!Sample_title = cy110_CD45pos_S345
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy103_CD45neg_CD90neg_S70
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203153
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203154
!Sample_title = cy103_CD45pos_S270
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy110_CD45pos_S333
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451755
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203157
!Sample_title = cy103_CD45pos_S215
!Sample_geo_accession = GSM3203157
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy103_CD45neg_CD90neg_S50
!Sample_geo_accession = GSM3203158
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203159
!Sample_title = cy103_CD45pos_S212
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203162
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203163
!Sample_title = cy103_CD45pos_S206
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy110_CD45pos_S350
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203165
!Sample_title = cy103_CD45neg_CD90neg_S85
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451743
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203166
!Sample_title = cy103_CD45pos_S281
!Sample_geo_accession = GSM3203166
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451742
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^SAMPLE = GSM3203167
!Sample_title = cy103_CD45pos_S207
!Sample_geo_accession = GSM3203167
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451741
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203168
!Sample_title = cy110_CD45pos_S315
!Sample_geo_accession = GSM3203168
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451740
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^SAMPLE = GSM3203169
!Sample_title = cy103_CD45neg_CD90neg_S21
!Sample_geo_accession = GSM3203169
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203170
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203171
!Sample_title = cy110_CD45neg_CD90neg_S145
!Sample_geo_accession = GSM3203171
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451737
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203172
!Sample_title = cy103_CD45neg_CD90neg_S55
!Sample_geo_accession = GSM3203172
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203173
!Sample_title = cy103_CD45neg_CD90neg_S66
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451735
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203174
!Sample_title = cy103_CD45neg_CD90neg_S54
!Sample_geo_accession = GSM3203174
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451734
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203175
!Sample_title = cy110_CD45pos_S347
!Sample_geo_accession = GSM3203175
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451733
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!Sample_title = cy103_CD45pos_S240
!Sample_geo_accession = GSM3203176
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy103_CD45neg_CD90neg_S46
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203179
!Sample_title = cy103_CD45pos_S255
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203180
!Sample_title = cy110_CD45pos_S371
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203181
!Sample_title = cy103_CD45neg_CD90neg_S81
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203182
!Sample_title = cy103_CD45pos_S237
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451793
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203192
!Sample_title = cy110_CD45pos_S377
!Sample_geo_accession = GSM3203192
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel110
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451792
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203193
!Sample_title = cy103_CD45pos_S208
!Sample_geo_accession = GSM3203193
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451791
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203194
!Sample_title = cy103_CD45pos_S211
!Sample_geo_accession = GSM3203194
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451790
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203195
!Sample_title = cy110_CD45pos_S295
!Sample_geo_accession = GSM3203195
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451789
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203196
!Sample_title = CY116CD45neg_CD90neg_S284
!Sample_geo_accession = GSM3203196
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451788
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203197
!Sample_title = CY116CD45neg_CD90neg_S196
!Sample_geo_accession = GSM3203197
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451787
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203198
!Sample_title = CY106_CD45neg_CD90neg_S341
!Sample_geo_accession = GSM3203198
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451786
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203199
!Sample_title = CY106_CD45neg_CD90neg_S291
!Sample_geo_accession = GSM3203199
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451785
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203200
!Sample_title = CY106_CD45neg_CD90neg_S301
!Sample_geo_accession = GSM3203200
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451784
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203201
!Sample_title = CY106_CD45neg_CD90neg_S378
!Sample_geo_accession = GSM3203201
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203202
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!Sample_geo_accession = GSM3203202
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203203
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203204
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!Sample_geo_accession = GSM3203204
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203205
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203206
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!Sample_geo_accession = GSM3203206
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451778
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^SAMPLE = GSM3203207
!Sample_title = CY106_CD45neg_CD90neg_10cells_S289
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203208
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451767
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203218
!Sample_title = CY106_CD45neg_CD90neg_S365
!Sample_geo_accession = GSM3203218
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451766
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203219
!Sample_title = CY106_CD45neg_CD90neg_S320
!Sample_geo_accession = GSM3203219
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451765
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203220
!Sample_title = CY106_CD45neg_CD90neg_S327
!Sample_geo_accession = GSM3203220
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451764
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203221
!Sample_title = CY106_CD45neg_CD90neg_S366
!Sample_geo_accession = GSM3203221
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel106
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451763
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203222
!Sample_title = MGH00478_CD45pos_1_S211
!Sample_geo_accession = GSM3203222
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451762
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203223
!Sample_title = MGH00478_CD45pos_1_S193
!Sample_geo_accession = GSM3203223
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451836
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203224
!Sample_title = cy126_CD45pos_1_S16
!Sample_geo_accession = GSM3203224
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel126
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451835
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203225
!Sample_title = MGH00478_CD45pos_2_S353
!Sample_geo_accession = GSM3203225
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel478
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451834
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203226
!Sample_title = cy126_CD45pos_2_S123
!Sample_geo_accession = GSM3203226
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel126
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451833
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy126_CD45pos_1_S1
!Sample_geo_accession = GSM3203227
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3203228
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203232
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451812
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203244
!Sample_title = MGH00478_CD45pos_1_S234
!Sample_geo_accession = GSM3203244
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451817
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy126_CD45pos_1_S10
!Sample_geo_accession = GSM3203245
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451816
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203246
!Sample_title = MGH00478_CD45pos_1_S282
!Sample_geo_accession = GSM3203246
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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^SAMPLE = GSM3203247
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203248
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203249
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_row_count = 0
^SAMPLE = GSM3203250
!Sample_title = MGH00478_CD45pos_2_S292
!Sample_geo_accession = GSM3203250
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_row_count = 0
^SAMPLE = GSM3203251
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451808
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203252
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!Sample_geo_accession = GSM3203252
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451807
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy126_CD45pos_2_S117
!Sample_geo_accession = GSM3203253
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3203258
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203259
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!Sample_geo_accession = GSM3203259
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203260
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451862
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203270
!Sample_title = cy126_CD45pos_1_S21
!Sample_geo_accession = GSM3203270
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451861
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203271
!Sample_title = MGH00478_CD45pos_2_S320
!Sample_geo_accession = GSM3203271
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451860
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203272
!Sample_title = cy126_CD45pos_1_S30
!Sample_geo_accession = GSM3203272
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451859
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203273
!Sample_title = cy126_CD45pos_1_S66
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203274
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203275
!Sample_title = MGH00478_CD45pos_1_S259
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203276
!Sample_title = MGH00478_CD45pos_1_S201
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203277
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!Sample_geo_accession = GSM3203277
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451854
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203278
!Sample_title = cy126_CD45pos_2_S172
!Sample_geo_accession = GSM3203278
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451853
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!Sample_title = MGH00478_CD45pos_2_S368
!Sample_geo_accession = GSM3203279
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy126_CD45pos_2_S158
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203285
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!Sample_geo_accession = GSM3203285
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451906
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203296
!Sample_title = cy126_CD45pos_1_S87
!Sample_geo_accession = GSM3203296
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451905
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203297
!Sample_title = MGH00478_CD45pos_1_S284
!Sample_geo_accession = GSM3203297
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203298
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!Sample_geo_accession = GSM3203298
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203299
!Sample_title = cy126_CD45pos_1_S3
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203300
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203301
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203302
!Sample_title = cy126_CD45pos_2_S114
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203303
!Sample_title = MGH00478_CD45pos_2_S350
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203304
!Sample_title = MGH00478_CD45pos_2_S383
!Sample_geo_accession = GSM3203304
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451897
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!Sample_title = MGH00478_CD45pos_2_S341
!Sample_geo_accession = GSM3203305
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3203309
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^SAMPLE = GSM3203310
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203311
!Sample_title = cy126_CD45pos_1_S27
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451880
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203322
!Sample_title = MGH00478_CD45pos_1_S219
!Sample_geo_accession = GSM3203322
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451879
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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!Sample_geo_accession = GSM3203323
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy126_CD45pos_2_S177
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203325
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203326
!Sample_title = cy126_CD45pos_1_S57
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203327
!Sample_title = MGH00478_CD45pos_1_S264
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203328
!Sample_title = cy126_CD45pos_1_S54
!Sample_geo_accession = GSM3203328
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203329
!Sample_title = cy126_CD45pos_2_S190
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451941
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203330
!Sample_title = MGH00478_CD45pos_2_S308
!Sample_geo_accession = GSM3203330
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451924
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203348
!Sample_title = cy126_CD45pos_1_S53
!Sample_geo_accession = GSM3203348
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451923
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203349
!Sample_title = cy126_CD45pos_1_S25
!Sample_geo_accession = GSM3203349
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451922
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203350
!Sample_title = MGH00478_CD45pos_1_S194
!Sample_geo_accession = GSM3203350
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451921
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203351
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!Sample_geo_accession = GSM3203351
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203352
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203353
!Sample_title = MGH00478_CD45pos_1_S249
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451918
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203354
!Sample_title = cy126_CD45pos_2_S132
!Sample_geo_accession = GSM3203354
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_row_count = 0
^SAMPLE = GSM3203355
!Sample_title = MGH00478_CD45pos_1_S265
!Sample_geo_accession = GSM3203355
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451916
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203356
!Sample_title = MGH00478_CD45pos_2_S315
!Sample_geo_accession = GSM3203356
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451915
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203357
!Sample_title = MGH00478_CD45pos_1_S227
!Sample_geo_accession = GSM3203357
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203358
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy126_CD45pos_1_S75
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203361
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203362
!Sample_title = MGH00478_CD45pos_2_S381
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3203363
!Sample_title = cy126_CD45pos_1_S86
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy126_CD45pos_1_S49
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451971
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203374
!Sample_title = cy126_CD45pos_2_S97
!Sample_geo_accession = GSM3203374
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451970
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203375
!Sample_title = cy126_CD45pos_1_S93
!Sample_geo_accession = GSM3203375
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451969
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^SAMPLE = GSM3203376
!Sample_title = MGH00478_CD45pos_2_S358
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203377
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203378
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203379
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203380
!Sample_title = MGH00478_CD45pos_1_S278
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203381
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203382
!Sample_title = cy126_CD45pos_1_S90
!Sample_geo_accession = GSM3203382
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3203383
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3203388
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^SAMPLE = GSM3203389
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451945
!Sample_supplementary_file_1 = NONE
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!Sample_geo_accession = GSM3203400
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203408
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3203415
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451991
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203426
!Sample_title = MGH00478_CD45pos_1_S262
!Sample_geo_accession = GSM3203426
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451990
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203427
!Sample_title = MGH00478_CD45pos_1_S198
!Sample_geo_accession = GSM3203427
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451989
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203428
!Sample_title = cy126_CD45pos_1_S35
!Sample_geo_accession = GSM3203428
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451988
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^SAMPLE = GSM3203429
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!Sample_geo_accession = GSM3203429
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451987
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203430
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203431
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451985
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^SAMPLE = GSM3203432
!Sample_title = cy126_CD45pos_1_S65
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203433
!Sample_title = cy126_CD45pos_1_S77
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451983
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203434
!Sample_title = cy126_CD45pos_1_S12
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3203435
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452037
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203452
!Sample_title = MGH00478_CD45pos_2_S334
!Sample_geo_accession = GSM3203452
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452036
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203453
!Sample_title = cy126_CD45pos_2_S169
!Sample_geo_accession = GSM3203453
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452035
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^SAMPLE = GSM3203454
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!Sample_geo_accession = GSM3203454
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203455
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203456
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203457
!Sample_title = MGH00478_CD45pos_2_S357
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203458
!Sample_title = MGH00478_CD45pos_1_S204
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203459
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203460
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452028
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203461
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!Sample_geo_accession = GSM3203461
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203466
!Sample_title = cy126_CD45pos_2_S153
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203467
!Sample_title = cy126_CD45pos_2_S159
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203468
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_geo_accession = GSM3203469
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3203470
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy129PA_CD45pos_S13
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy129PB_CD45pos_S264
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452084
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203478
!Sample_title = cy129PA_CD45pos_S59
!Sample_geo_accession = GSM3203478
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452083
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203479
!Sample_title = cy129PA_CD45pos_S24
!Sample_geo_accession = GSM3203479
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452082
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203480
!Sample_title = cy129PA_CD45pos_S11
!Sample_geo_accession = GSM3203480
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452081
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203481
!Sample_title = cy129PB_CD45pos_S261
!Sample_geo_accession = GSM3203481
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452077
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203482
!Sample_title = cy129PB_CD45pos_S288
!Sample_geo_accession = GSM3203482
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452076
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203483
!Sample_title = cy129PA_CD45pos_S15
!Sample_geo_accession = GSM3203483
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452075
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203484
!Sample_title = cy129PB_CD45pos_S231
!Sample_geo_accession = GSM3203484
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452080
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203485
!Sample_title = cy129PB_CD45pos_S247
!Sample_geo_accession = GSM3203485
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452079
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203486
!Sample_title = cy106_CD45neg_CD90neg_S309_20
!Sample_geo_accession = GSM3203486
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452078
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203487
!Sample_title = cy106_CD45neg_CD90neg_S378_21
!Sample_geo_accession = GSM3203487
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452074
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^SAMPLE = GSM3203488
!Sample_title = cy129PB_CD45pos_S202
!Sample_geo_accession = GSM3203488
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203489
!Sample_title = cy129PB_CD45pos_S208
!Sample_geo_accession = GSM3203489
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203490
!Sample_title = cy129PB_CD45pos_S199
!Sample_geo_accession = GSM3203490
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203491
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203492
!Sample_title = cy129PA_CD45pos_S6
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203493
!Sample_title = cy129PB_CD45pos_S258
!Sample_geo_accession = GSM3203493
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203494
!Sample_title = cy129PA_CD45pos_S71
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy129PA_CD45pos_S1
!Sample_geo_accession = GSM3203495
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203496
!Sample_title = cy129PA_CD45pos_S83
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203497
!Sample_title = cy129PB_CD45pos_S250
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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^SAMPLE = GSM3203500
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^SAMPLE = GSM3203501
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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^SAMPLE = GSM3203502
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203503
!Sample_title = cy129PB_CD45pos_S265
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452058
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203504
!Sample_title = cy129PA_CD45neg_CD90neg_S110
!Sample_geo_accession = GSM3203504
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452057
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203505
!Sample_title = cy129PB_CD45pos_S222
!Sample_geo_accession = GSM3203505
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452056
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203506
!Sample_title = cy129PB_CD45pos_S253
!Sample_geo_accession = GSM3203506
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452055
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203507
!Sample_title = cy129PA_CD45neg_CD90neg_S105
!Sample_geo_accession = GSM3203507
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452054
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203508
!Sample_title = cy129PA_CD45pos_S2
!Sample_geo_accession = GSM3203508
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452053
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203509
!Sample_title = cy129PA_CD45neg_CD90neg_S108
!Sample_geo_accession = GSM3203509
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452052
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203510
!Sample_title = cy129PA_CD45pos_S84
!Sample_geo_accession = GSM3203510
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452122
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203511
!Sample_title = cy129PA_CD45pos_S26
!Sample_geo_accession = GSM3203511
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452121
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203512
!Sample_title = cy129PA_CD45neg_CD90neg_S99
!Sample_geo_accession = GSM3203512
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452120
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203513
!Sample_title = cy129PA_CD45neg_CD90neg_S189
!Sample_geo_accession = GSM3203513
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452119
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203514
!Sample_title = cy106_CD45neg_CD90neg_S347
!Sample_geo_accession = GSM3203514
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452118
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203515
!Sample_title = cy129PA_CD45neg_CD90neg_S140
!Sample_geo_accession = GSM3203515
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452117
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203516
!Sample_title = cy106_CD45neg_CD90neg_S311
!Sample_geo_accession = GSM3203516
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203517
!Sample_title = cy129PA_CD45pos_S77
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452115
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203518
!Sample_title = cy129PB_CD45pos_S230
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452114
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3203519
!Sample_title = cy129PA_CD45pos_S86
!Sample_geo_accession = GSM3203519
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203520
!Sample_title = cy129PB_CD45pos_S194
!Sample_geo_accession = GSM3203520
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452112
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^SAMPLE = GSM3203521
!Sample_title = cy106_CD45neg_CD90neg_S366
!Sample_geo_accession = GSM3203521
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452111
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203522
!Sample_title = cy106_CD45neg_CD90neg_S348
!Sample_geo_accession = GSM3203522
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203523
!Sample_title = cy129PA_CD45neg_CD90neg_S154
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203524
!Sample_title = cy129PB_CD45pos_S211
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203525
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203526
!Sample_title = cy129PB_CD45pos_S274
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203527
!Sample_title = cy129PA_CD45neg_CD90neg_S127
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203528
!Sample_title = cy129PB_CD45pos_S226
!Sample_geo_accession = GSM3203528
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203529
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!Sample_geo_accession = GSM3203529
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452103
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203530
!Sample_title = cy129PA_CD45neg_CD90neg_S151
!Sample_geo_accession = GSM3203530
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452102
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203531
!Sample_title = cy129PB_CD45pos_S269
!Sample_geo_accession = GSM3203531
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452101
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203532
!Sample_title = cy129PA_CD45pos_S79
!Sample_geo_accession = GSM3203532
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452100
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203533
!Sample_title = cy129PA_CD45neg_CD90neg_S171
!Sample_geo_accession = GSM3203533
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452099
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203534
!Sample_title = cy129PB_CD45pos_S232
!Sample_geo_accession = GSM3203534
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: NK
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452098
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203535
!Sample_title = cy129PA_CD45neg_CD90neg_S120
!Sample_geo_accession = GSM3203535
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452097
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203536
!Sample_title = cy129PA_CD45pos_S34
!Sample_geo_accession = GSM3203536
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452096
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203537
!Sample_title = cy129PA_CD45neg_CD90neg_S167
!Sample_geo_accession = GSM3203537
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452095
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203538
!Sample_title = cy129PB_CD45pos_S275
!Sample_geo_accession = GSM3203538
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452094
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203539
!Sample_title = cy129PA_CD45neg_CD90neg_S132
!Sample_geo_accession = GSM3203539
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: CAF
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452093
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203540
!Sample_title = cy129PA_CD45pos_S67
!Sample_geo_accession = GSM3203540
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452091
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203541
!Sample_title = cy129PA_CD45pos_S23
!Sample_geo_accession = GSM3203541
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452090
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203542
!Sample_title = cy129PA_CD45pos_S68
!Sample_geo_accession = GSM3203542
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452089
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203543
!Sample_title = cy129PB_CD45pos_S206
!Sample_geo_accession = GSM3203543
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452088
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203544
!Sample_title = cy129PB_CD45pos_S229
!Sample_geo_accession = GSM3203544
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452092
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203545
!Sample_title = cy129PA_CD45neg_CD90neg_S128
!Sample_geo_accession = GSM3203545
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452087
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203546
!Sample_title = cy129PB_CD45pos_S193
!Sample_geo_accession = GSM3203546
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3203555
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452150
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203556
!Sample_title = cy129PA_CD45neg_CD90neg_S98
!Sample_geo_accession = GSM3203556
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452149
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203557
!Sample_title = cy129PB_CD45pos_S236
!Sample_geo_accession = GSM3203557
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452148
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203558
!Sample_title = cy129PA_CD45pos_S18
!Sample_geo_accession = GSM3203558
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452147
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203559
!Sample_title = cy129PA_CD45neg_CD90neg_S122
!Sample_geo_accession = GSM3203559
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452146
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203560
!Sample_title = cy106_CD45neg_CD90neg_S319
!Sample_geo_accession = GSM3203560
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452145
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203561
!Sample_title = cy129PB_CD45pos_S286
!Sample_geo_accession = GSM3203561
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452144
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203562
!Sample_title = cy129PA_CD45neg_CD90neg_S125
!Sample_geo_accession = GSM3203562
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452143
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203563
!Sample_title = cy129PB_CD45pos_S240
!Sample_geo_accession = GSM3203563
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452142
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203564
!Sample_title = cy129PA_CD45neg_CD90neg_S161
!Sample_geo_accession = GSM3203564
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452141
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203565
!Sample_title = cy129PB_CD45pos_S273
!Sample_geo_accession = GSM3203565
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452140
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203566
!Sample_title = cy129PA_CD45pos_S25
!Sample_geo_accession = GSM3203566
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452139
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203567
!Sample_title = cy129PA_CD45pos_S40
!Sample_geo_accession = GSM3203567
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452138
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203568
!Sample_title = cy129PA_CD45pos_S5
!Sample_geo_accession = GSM3203568
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452137
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203569
!Sample_title = cy129PA_CD45neg_CD90neg_S129
!Sample_geo_accession = GSM3203569
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452136
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203570
!Sample_title = cy129PA_CD45pos_S65
!Sample_geo_accession = GSM3203570
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452135
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203571
!Sample_title = cy129PA_CD45neg_CD90neg_S138
!Sample_geo_accession = GSM3203571
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452134
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203572
!Sample_title = cy129PA_CD45neg_CD90neg_S142
!Sample_geo_accession = GSM3203572
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452133
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!Sample_title = cy129PB_CD45pos_S246
!Sample_geo_accession = GSM3203573
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203574
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!Sample_geo_accession = GSM3203574
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203575
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3203576
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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^SAMPLE = GSM3203577
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^SAMPLE = GSM3203578
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^SAMPLE = GSM3203579
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^SAMPLE = GSM3203580
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203581
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452124
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203582
!Sample_title = cy129PA_CD45pos_S95
!Sample_geo_accession = GSM3203582
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452123
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203583
!Sample_title = cy129PB_CD45pos_S203
!Sample_geo_accession = GSM3203583
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: NK
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452198
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203584
!Sample_title = cy129PA_CD45pos_S85
!Sample_geo_accession = GSM3203584
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452197
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203585
!Sample_title = cy129PA_CD45pos_S52
!Sample_geo_accession = GSM3203585
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452196
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203586
!Sample_title = cy129PB_CD45pos_S207
!Sample_geo_accession = GSM3203586
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452195
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203587
!Sample_title = cy129PA_CD45pos_S89
!Sample_geo_accession = GSM3203587
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452194
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203588
!Sample_title = cy129PB_CD45pos_S243
!Sample_geo_accession = GSM3203588
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452193
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203589
!Sample_title = cy129PA_CD45pos_S45
!Sample_geo_accession = GSM3203589
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452192
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203590
!Sample_title = cy129PA_CD45pos_S54
!Sample_geo_accession = GSM3203590
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452191
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203591
!Sample_title = cy129PA_CD45pos_S47
!Sample_geo_accession = GSM3203591
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452190
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203592
!Sample_title = cy129PA_CD45pos_S3
!Sample_geo_accession = GSM3203592
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452189
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203593
!Sample_title = cy129PA_CD45neg_CD90neg_S130
!Sample_geo_accession = GSM3203593
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452188
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3203594
!Sample_title = cy129PB_CD45pos_S245
!Sample_geo_accession = GSM3203594
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452187
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203595
!Sample_title = cy129PA_CD45neg_CD90neg_S186
!Sample_geo_accession = GSM3203595
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452186
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203596
!Sample_title = cy106_CD45neg_CD90neg_S290
!Sample_geo_accession = GSM3203596
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452185
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203597
!Sample_title = cy129PA_CD45pos_S14
!Sample_geo_accession = GSM3203597
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452184
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203598
!Sample_title = cy106_CD45neg_CD90neg_S294
!Sample_geo_accession = GSM3203598
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452183
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^SAMPLE = GSM3203599
!Sample_title = cy129PB_CD45pos_S254
!Sample_geo_accession = GSM3203599
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203600
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!Sample_geo_accession = GSM3203600
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy129PB_CD45pos_S200
!Sample_geo_accession = GSM3203601
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203602
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3203604
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203605
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203606
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203607
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452174
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203608
!Sample_title = cy106_CD45neg_CD90neg_S338
!Sample_geo_accession = GSM3203608
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452173
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203609
!Sample_title = cy129PA_CD45pos_S55
!Sample_geo_accession = GSM3203609
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452172
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203610
!Sample_title = cy129PA_CD45pos_S94
!Sample_geo_accession = GSM3203610
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452171
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203611
!Sample_title = cy129PA_CD45pos_S69
!Sample_geo_accession = GSM3203611
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452170
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203612
!Sample_title = cy129PA_CD45neg_CD90neg_S191
!Sample_geo_accession = GSM3203612
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452169
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203613
!Sample_title = cy129PA_CD45pos_S51
!Sample_geo_accession = GSM3203613
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452168
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203614
!Sample_title = cy129PB_CD45pos_S209
!Sample_geo_accession = GSM3203614
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452167
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203615
!Sample_title = cy129PB_CD45pos_S280
!Sample_geo_accession = GSM3203615
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452166
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203616
!Sample_title = cy129PA_CD45pos_S4
!Sample_geo_accession = GSM3203616
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452165
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203617
!Sample_title = cy129PA_CD45pos_S88
!Sample_geo_accession = GSM3203617
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452164
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203618
!Sample_title = cy129PA_CD45pos_S58
!Sample_geo_accession = GSM3203618
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203619
!Sample_title = cy129PA_CD45pos_S28
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203620
!Sample_title = cy129PA_CD45pos_S19
!Sample_geo_accession = GSM3203620
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203621
!Sample_title = cy129PA_CD45pos_S9
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203622
!Sample_title = cy129PA_CD45pos_S36
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203623
!Sample_title = cy129PB_CD45pos_S204
!Sample_geo_accession = GSM3203623
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203624
!Sample_title = cy129PA_CD45neg_CD90neg_S126
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452222
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!Sample_series_id = GSE115978
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^SAMPLE = GSM3203625
!Sample_title = cy129PA_CD45pos_S76
!Sample_geo_accession = GSM3203625
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203626
!Sample_title = cy129PA_CD45neg_CD90neg_S144
!Sample_geo_accession = GSM3203626
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203627
!Sample_title = cy129PA_CD45neg_CD90neg_S97
!Sample_geo_accession = GSM3203627
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3203628
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203629
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203630
!Sample_title = cy129PB_CD45pos_S266
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203631
!Sample_title = cy129PA_CD45neg_CD90neg_S164
!Sample_geo_accession = GSM3203631
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203632
!Sample_title = cy106_CD45neg_CD90neg_S364
!Sample_geo_accession = GSM3203632
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203633
!Sample_title = cy129PA_CD45neg_CD90neg_S114
!Sample_geo_accession = GSM3203633
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452213
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203634
!Sample_title = cy106_CD45neg_CD90neg_S357_24
!Sample_geo_accession = GSM3203634
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: CAF
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452212
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203635
!Sample_title = cy129PA_CD45pos_S35
!Sample_geo_accession = GSM3203635
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452211
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203636
!Sample_title = cy129PA_CD45pos_S87
!Sample_geo_accession = GSM3203636
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452210
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203637
!Sample_title = cy129PA_CD45pos_S49
!Sample_geo_accession = GSM3203637
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452209
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203638
!Sample_title = cy129PB_CD45pos_S281
!Sample_geo_accession = GSM3203638
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452208
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203639
!Sample_title = cy129PB_CD45pos_S215
!Sample_geo_accession = GSM3203639
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452207
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203640
!Sample_title = cy129PA_CD45neg_CD90neg_S182
!Sample_geo_accession = GSM3203640
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452206
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203641
!Sample_title = cy129PA_CD45neg_CD90neg_S107
!Sample_geo_accession = GSM3203641
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452205
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203642
!Sample_title = cy129PA_CD45pos_S41
!Sample_geo_accession = GSM3203642
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452204
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203643
!Sample_title = cy129PA_CD45pos_S57
!Sample_geo_accession = GSM3203643
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452203
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203644
!Sample_title = cy129PA_CD45neg_CD90neg_S162
!Sample_geo_accession = GSM3203644
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452202
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203645
!Sample_title = cy106_CD45neg_CD90neg_S299
!Sample_geo_accession = GSM3203645
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452201
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203646
!Sample_title = cy129PA_CD45neg_CD90neg_S141
!Sample_geo_accession = GSM3203646
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: CAF
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452200
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203647
!Sample_title = cy129PB_CD45pos_S282
!Sample_geo_accession = GSM3203647
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452199
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203648
!Sample_title = cy129PB_CD45pos_S214
!Sample_geo_accession = GSM3203648
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452258
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203649
!Sample_title = cy129PA_CD45neg_CD90neg_S136
!Sample_geo_accession = GSM3203649
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452257
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203650
!Sample_title = cy129PB_CD45pos_S277
!Sample_geo_accession = GSM3203650
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452256
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203651
!Sample_title = cy129PA_CD45neg_CD90neg_S103
!Sample_geo_accession = GSM3203651
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452255
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203652
!Sample_title = cy129PA_CD45pos_S43
!Sample_geo_accession = GSM3203652
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452254
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203653
!Sample_title = cy106_CD45neg_CD90neg_S325
!Sample_geo_accession = GSM3203653
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_library_strategy = RNA-Seq
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^SAMPLE = GSM3203654
!Sample_title = cy129PA_CD45pos_S82
!Sample_geo_accession = GSM3203654
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203655
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203656
!Sample_title = cy129PA_CD45pos_S22
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203657
!Sample_title = cy129PA_CD45pos_S12
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203658
!Sample_title = cy129PA_CD45pos_S39
!Sample_geo_accession = GSM3203658
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203659
!Sample_title = cy129PA_CD45neg_CD90neg_S174
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452247
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203660
!Sample_title = cy129PA_CD45neg_CD90neg_S106
!Sample_geo_accession = GSM3203660
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452246
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203661
!Sample_title = cy129PB_CD45pos_S221
!Sample_geo_accession = GSM3203661
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452245
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203662
!Sample_title = cy129PA_CD45neg_CD90neg_S173
!Sample_geo_accession = GSM3203662
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452244
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203663
!Sample_title = cy129PA_CD45pos_S92
!Sample_geo_accession = GSM3203663
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452243
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203664
!Sample_title = cy129PA_CD45neg_CD90neg_S181
!Sample_geo_accession = GSM3203664
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452242
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203665
!Sample_title = cy129PB_CD45pos_S278
!Sample_geo_accession = GSM3203665
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452241
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203666
!Sample_title = cy106_CD45neg_CD90neg_S344_25
!Sample_geo_accession = GSM3203666
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452240
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203667
!Sample_title = cy129PA_CD45pos_S66
!Sample_geo_accession = GSM3203667
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452239
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203668
!Sample_title = cy106_CD45neg_CD90neg_S306_26
!Sample_geo_accession = GSM3203668
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452238
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203669
!Sample_title = cy129PA_CD45neg_CD90neg_S118
!Sample_geo_accession = GSM3203669
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452237
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203670
!Sample_title = cy129PA_CD45pos_S60
!Sample_geo_accession = GSM3203670
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452236
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203671
!Sample_title = cy129PA_CD45pos_S30
!Sample_geo_accession = GSM3203671
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452235
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203672
!Sample_title = cy129PB_CD45pos_S239
!Sample_geo_accession = GSM3203672
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452234
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203673
!Sample_title = cy129PA_CD45neg_CD90neg_S184
!Sample_geo_accession = GSM3203673
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452233
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203674
!Sample_title = cy106_CD45neg_CD90neg_S291
!Sample_geo_accession = GSM3203674
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452232
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203675
!Sample_title = cy106_CD45neg_CD90neg_S352
!Sample_geo_accession = GSM3203675
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel106
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452231
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203676
!Sample_title = cy129PA_CD45pos_S53
!Sample_geo_accession = GSM3203676
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452230
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy129PA_CD45pos_S64
!Sample_geo_accession = GSM3203677
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203678
!Sample_title = cy129PB_CD45pos_S237
!Sample_geo_accession = GSM3203678
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203679
!Sample_title = cy129PB_CD45pos_S270
!Sample_geo_accession = GSM3203679
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203680
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203681
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203682
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203683
!Sample_title = cy106_CD45neg_CD90neg_S376
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203684
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!Sample_geo_accession = GSM3203684
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203685
!Sample_title = cy129PA_CD45pos_S27
!Sample_geo_accession = GSM3203685
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452296
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203686
!Sample_title = cy129PB_CD45pos_S284
!Sample_geo_accession = GSM3203686
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pb
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452295
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203687
!Sample_title = cy129PB_CD45pos_S224
!Sample_geo_accession = GSM3203687
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452294
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203688
!Sample_title = cy129PA_CD45pos_S31
!Sample_geo_accession = GSM3203688
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452293
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203689
!Sample_title = cy04.3_CD45pos_S4
!Sample_geo_accession = GSM3203689
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452292
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203690
!Sample_title = cy04.3_CD45pos_S12
!Sample_geo_accession = GSM3203690
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452291
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203691
!Sample_title = cy04.3_CD45pos_S16
!Sample_geo_accession = GSM3203691
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452286
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203692
!Sample_title = cy04.3_CD45pos_S56
!Sample_geo_accession = GSM3203692
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452290
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203693
!Sample_title = cy04.3_CD45pos_S8
!Sample_geo_accession = GSM3203693
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452289
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203694
!Sample_title = cy121.1_CD45pos_S260
!Sample_geo_accession = GSM3203694
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452288
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!Sample_geo_accession = GSM3203695
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203700
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452270
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203712
!Sample_title = cy04.3_CD45pos_S75
!Sample_geo_accession = GSM3203712
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel04.3
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452269
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203713
!Sample_title = cy04.3_CD45pos_S86
!Sample_geo_accession = GSM3203713
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452268
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203714
!Sample_title = cy121.1_CD45pos_S250
!Sample_geo_accession = GSM3203714
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452267
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203715
!Sample_title = cy04.3_CD45pos_S31
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452266
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203716
!Sample_title = cy121.1_CD45neg_S289
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452261
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy04.3_CD45pos_S59
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452265
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203718
!Sample_title = cy04.3_CD45pos_S66
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452264
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203719
!Sample_title = cy121.1_CD45pos_S232
!Sample_geo_accession = GSM3203719
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452263
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203720
!Sample_title = cy04.3_CD45pos_S17
!Sample_geo_accession = GSM3203720
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452262
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy121.1_CD45pos_S215
!Sample_geo_accession = GSM3203721
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy04.3_CD45pos_S40
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy121.1_CD45pos_S200
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203726
!Sample_title = cy121.1_CD45pos_S271
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy04.3_CD45pos_S36
!Sample_geo_accession = GSM3203727
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450410
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203738
!Sample_title = cy04.3_CD45pos_S39
!Sample_geo_accession = GSM3203738
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450409
!Sample_supplementary_file_1 = NONE
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy04.3_CD45pos_S72
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy04.3_CD45pos_S27
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203746
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450401
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203753
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452422
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203764
!Sample_title = cy121.1_CD45pos_S264
!Sample_geo_accession = GSM3203764
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452421
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203765
!Sample_title = cy04.3_CD45pos_S88
!Sample_geo_accession = GSM3203765
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452420
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203766
!Sample_title = cy04.3_CD45pos_S30
!Sample_geo_accession = GSM3203766
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452419
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203767
!Sample_title = cy121.1_CD45pos_S275
!Sample_geo_accession = GSM3203767
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452418
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203768
!Sample_title = cy121.1_CD45neg_S325
!Sample_geo_accession = GSM3203768
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203769
!Sample_title = cy04.3_CD45pos_S58
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452416
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203770
!Sample_title = cy04.3_CD45pos_S35
!Sample_geo_accession = GSM3203770
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452415
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^SAMPLE = GSM3203771
!Sample_title = cy04.3_CD45pos_S96
!Sample_geo_accession = GSM3203771
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452414
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203772
!Sample_title = cy04.3_CD45pos_S43
!Sample_geo_accession = GSM3203772
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452413
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203773
!Sample_title = cy121.1_CD45neg_S301
!Sample_geo_accession = GSM3203773
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452412
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!Sample_title = cy121.1_CD45pos_S234
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy04.3_CD45pos_S15
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203776
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy121.1_CD45pos_S213
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203778
!Sample_title = cy04.3_CD45pos_S51
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452409
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^SAMPLE = GSM3203779
!Sample_title = cy121.1_CD45pos_S207
!Sample_geo_accession = GSM3203779
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203780
!Sample_title = cy04.3_CD45pos_S41
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452394
!Sample_supplementary_file_1 = NONE
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!Sample_title = cy04.3_CD45pos_S11
!Sample_geo_accession = GSM3203790
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452393
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!Sample_title = cy04.3_CD45pos_S29
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy04.3_CD45pos_S48
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!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy121.1_CD45neg_S382
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452385
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203799
!Sample_title = cy121.1_CD45pos_S205
!Sample_geo_accession = GSM3203799
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452384
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!Sample_title = cy04.3_CD45pos_S80
!Sample_geo_accession = GSM3203800
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203801
!Sample_title = cy04.3_CD45pos_S34
!Sample_geo_accession = GSM3203801
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3203802
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy121.1_CD45pos_S337
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203804
!Sample_title = cy128_CD45pos_S174
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203805
!Sample_title = cy129_CD45negCD90neg_S55
!Sample_geo_accession = GSM3203805
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203806
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_geo_accession = GSM3203807
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3203808
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy129_CD45negCD90neg_S2
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_submission_date = Jun 18 2018
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^SAMPLE = GSM3203813
!Sample_title = cy129_CD45negCD90neg_S65
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!Sample_submission_date = Jun 18 2018
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!Sample_title = cy121.1_CD45pos_S333
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203815
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452368
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203816
!Sample_title = cy128_CD45neg_S250
!Sample_geo_accession = GSM3203816
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452367
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203817
!Sample_title = cy121.1_CD45pos_S312
!Sample_geo_accession = GSM3203817
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452366
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203818
!Sample_title = cy128_CD45pos_S136
!Sample_geo_accession = GSM3203818
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452360
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203819
!Sample_title = cy121.1_CD45pos_S366
!Sample_geo_accession = GSM3203819
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452359
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203820
!Sample_title = cy128_CD45pos_S152
!Sample_geo_accession = GSM3203820
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452358
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203821
!Sample_title = cy121.1_CD45pos_S360
!Sample_geo_accession = GSM3203821
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452357
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203822
!Sample_title = cy121.1_CD45pos_S355
!Sample_geo_accession = GSM3203822
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452356
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203823
!Sample_title = cy128_CD45pos_S130
!Sample_geo_accession = GSM3203823
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452355
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203824
!Sample_title = cy129_CD45negCD90neg_S25
!Sample_geo_accession = GSM3203824
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452354
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203825
!Sample_title = cy121.1_CD45pos_S341
!Sample_geo_accession = GSM3203825
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452353
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203826
!Sample_title = cy128_CD45pos_S112
!Sample_geo_accession = GSM3203826
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452352
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203827
!Sample_title = cy128_CD45neg_S219
!Sample_geo_accession = GSM3203827
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452351
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203828
!Sample_title = cy121.1_CD45pos_S303
!Sample_geo_accession = GSM3203828
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203829
!Sample_title = cy128_CD45neg_S255
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452349
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!Sample_data_row_count = 0
^SAMPLE = GSM3203830
!Sample_title = cy129_CD45negCD90neg_S43
!Sample_geo_accession = GSM3203830
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452348
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203831
!Sample_title = cy128_CD45pos_S133
!Sample_geo_accession = GSM3203831
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452347
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203832
!Sample_title = cy128_CD45pos_S101
!Sample_geo_accession = GSM3203832
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452346
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203839
!Sample_title = cy129_CD45negCD90neg_S22
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy121.1_CD45pos_S324
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203841
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452337
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203842
!Sample_title = cy128_CD45pos_S116
!Sample_geo_accession = GSM3203842
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452336
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203843
!Sample_title = cy128_CD45pos_S141
!Sample_geo_accession = GSM3203843
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452335
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203844
!Sample_title = cy129_CD45negCD90neg_S79
!Sample_geo_accession = GSM3203844
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452334
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203845
!Sample_title = cy129_CD45negCD90neg_S7
!Sample_geo_accession = GSM3203845
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452398
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203846
!Sample_title = cy128_CD45pos_S109
!Sample_geo_accession = GSM3203846
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452397
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203847
!Sample_title = cy128_CD45pos_S159
!Sample_geo_accession = GSM3203847
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452396
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203848
!Sample_title = cy128_CD45neg_S209
!Sample_geo_accession = GSM3203848
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452324
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203849
!Sample_title = cy121.1_CD45pos_S301
!Sample_geo_accession = GSM3203849
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452323
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203850
!Sample_title = cy121.1_CD45pos_S294
!Sample_geo_accession = GSM3203850
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452322
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203851
!Sample_title = cy128_CD45neg_S194
!Sample_geo_accession = GSM3203851
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452321
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203852
!Sample_title = cy128_CD45pos_S180
!Sample_geo_accession = GSM3203852
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452320
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^SAMPLE = GSM3203853
!Sample_title = cy128_CD45pos_S187
!Sample_geo_accession = GSM3203853
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3203854
!Sample_title = cy121.1_CD45pos_S381
!Sample_geo_accession = GSM3203854
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3203855
!Sample_title = cy121.1_CD45pos_S309
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203856
!Sample_title = cy128_CD45pos_S186
!Sample_geo_accession = GSM3203856
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452316
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203857
!Sample_title = cy129_CD45negCD90neg_S3
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203858
!Sample_title = cy121.1_CD45pos_S336
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452314
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3203860
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3203861
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3203864
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203865
!Sample_title = cy129_CD45negCD90neg_S70
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_title = cy121.1_CD45pos_S293
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203867
!Sample_title = cy128_CD45pos_S179
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452305
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203868
!Sample_title = cy128_CD45pos_S125
!Sample_geo_accession = GSM3203868
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452304
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203869
!Sample_title = cy129_CD45negCD90neg_S60
!Sample_geo_accession = GSM3203869
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452303
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203870
!Sample_title = cy121.1_CD45pos_S289
!Sample_geo_accession = GSM3203870
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452302
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203871
!Sample_title = cy121.1_CD45pos_S297
!Sample_geo_accession = GSM3203871
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452301
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203872
!Sample_title = cy128_CD45neg_S256
!Sample_geo_accession = GSM3203872
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452300
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203873
!Sample_title = cy129_CD45negCD90neg_S26
!Sample_geo_accession = GSM3203873
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452363
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203874
!Sample_title = cy128_CD45pos_S190
!Sample_geo_accession = GSM3203874
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452362
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203875
!Sample_title = cy121.1_CD45pos_S334
!Sample_geo_accession = GSM3203875
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452361
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203876
!Sample_title = cy128_CD45pos_S151
!Sample_geo_accession = GSM3203876
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452495
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203877
!Sample_title = cy129_CD45negCD90neg_S85
!Sample_geo_accession = GSM3203877
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452494
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203878
!Sample_title = cy121.1_CD45pos_S376
!Sample_geo_accession = GSM3203878
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452493
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203879
!Sample_title = cy129_CD45negCD90neg_S87
!Sample_geo_accession = GSM3203879
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452492
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203880
!Sample_title = cy121.1_CD45pos_S351
!Sample_geo_accession = GSM3203880
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: NK
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452491
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203881
!Sample_title = cy128_CD45pos_S155
!Sample_geo_accession = GSM3203881
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452490
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203882
!Sample_title = cy129_CD45negCD90neg_S32
!Sample_geo_accession = GSM3203882
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452489
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203883
!Sample_title = cy128_CD45neg_S283
!Sample_geo_accession = GSM3203883
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452488
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203884
!Sample_title = cy128_CD45neg_S196
!Sample_geo_accession = GSM3203884
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452487
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203885
!Sample_title = cy128_CD45neg_S213
!Sample_geo_accession = GSM3203885
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy121.1_CD45pos_S325
!Sample_geo_accession = GSM3203886
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_title = cy129_CD45negCD90neg_S46
!Sample_geo_accession = GSM3203887
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203888
!Sample_title = cy129_CD45negCD90neg_S1
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203891
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203892
!Sample_title = cy128_CD45pos_S182
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203893
!Sample_title = cy129_CD45negCD90neg_S8
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452477
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203894
!Sample_title = cy121.1_CD45pos_S348
!Sample_geo_accession = GSM3203894
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452476
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452469
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203903
!Sample_title = cy121.1_CD45pos_S339
!Sample_geo_accession = GSM3203903
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452468
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203904
!Sample_title = cy129_CD45negCD90neg_S56
!Sample_geo_accession = GSM3203904
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452467
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203905
!Sample_title = cy129_CD45negCD90neg_S54
!Sample_geo_accession = GSM3203905
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452466
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203906
!Sample_title = cy121.1_CD45pos_S354
!Sample_geo_accession = GSM3203906
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452465
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203907
!Sample_title = cy121.1_CD45pos_S343
!Sample_geo_accession = GSM3203907
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: NK
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452464
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203908
!Sample_title = cy121.1_CD45pos_S323
!Sample_geo_accession = GSM3203908
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452463
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203909
!Sample_title = cy129_CD45negCD90neg_S86
!Sample_geo_accession = GSM3203909
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452462
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203910
!Sample_title = cy121.1_CD45pos_S382
!Sample_geo_accession = GSM3203910
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452461
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203911
!Sample_title = cy128_CD45neg_S233
!Sample_geo_accession = GSM3203911
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452460
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203912
!Sample_title = cy121.1_CD45pos_S335
!Sample_geo_accession = GSM3203912
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452459
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203913
!Sample_title = cy129_CD45negCD90neg_S27
!Sample_geo_accession = GSM3203913
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452458
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203914
!Sample_title = cy128_CD45neg_S277
!Sample_geo_accession = GSM3203914
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452457
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203915
!Sample_title = cy129_CD45negCD90neg_S4
!Sample_geo_accession = GSM3203915
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452532
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203916
!Sample_title = cy121.1_CD45pos_S295
!Sample_geo_accession = GSM3203916
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452531
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203917
!Sample_title = cy129_CD45negCD90neg_S44
!Sample_geo_accession = GSM3203917
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452530
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3203918
!Sample_title = cy128_CD45neg_S265
!Sample_geo_accession = GSM3203918
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452529
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203919
!Sample_title = cy129_CD45negCD90neg_S68
!Sample_geo_accession = GSM3203919
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452528
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203920
!Sample_title = cy121.1_CD45pos_S370
!Sample_geo_accession = GSM3203920
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452527
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203921
!Sample_title = cy121.1_CD45pos_S330
!Sample_geo_accession = GSM3203921
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452526
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203922
!Sample_title = cy129_CD45negCD90neg_S75
!Sample_geo_accession = GSM3203922
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452525
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203923
!Sample_title = cy121.1_CD45pos_S345
!Sample_geo_accession = GSM3203923
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452524
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203924
!Sample_title = cy121.1_CD45pos_S320
!Sample_geo_accession = GSM3203924
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452523
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203925
!Sample_title = cy129_CD45negCD90neg_S18
!Sample_geo_accession = GSM3203925
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452522
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203926
!Sample_title = cy128_CD45neg_S200
!Sample_geo_accession = GSM3203926
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452521
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203927
!Sample_title = cy121.1_CD45pos_S373
!Sample_geo_accession = GSM3203927
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452520
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203928
!Sample_title = cy121.1_CD45pos_S310
!Sample_geo_accession = GSM3203928
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452519
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203929
!Sample_title = cy128_CD45pos_S160
!Sample_geo_accession = GSM3203929
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452518
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203930
!Sample_title = cy129_CD45negCD90neg_S28
!Sample_geo_accession = GSM3203930
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452517
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203931
!Sample_title = cy128_CD45pos_S161
!Sample_geo_accession = GSM3203931
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452516
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203932
!Sample_title = cy121.1_CD45pos_S350
!Sample_geo_accession = GSM3203932
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452515
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203933
!Sample_title = cy121.1_CD45pos_S346
!Sample_geo_accession = GSM3203933
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452510
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203934
!Sample_title = cy128_CD45pos_S138
!Sample_geo_accession = GSM3203934
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452514
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203935
!Sample_title = cy128_CD45neg_S229
!Sample_geo_accession = GSM3203935
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452513
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203936
!Sample_title = cy128_CD45neg_S212
!Sample_geo_accession = GSM3203936
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452512
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203937
!Sample_title = cy128_CD45pos_S172
!Sample_geo_accession = GSM3203937
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: B.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452511
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203938
!Sample_title = cy128_CD45pos_S134
!Sample_geo_accession = GSM3203938
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452509
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^SAMPLE = GSM3203939
!Sample_title = cy128_CD45neg_S232
!Sample_geo_accession = GSM3203939
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452508
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!Sample_title = cy121.1_CD45pos_S364
!Sample_geo_accession = GSM3203940
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452507
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^SAMPLE = GSM3203941
!Sample_title = cy129_CD45negCD90neg_S41
!Sample_geo_accession = GSM3203941
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203942
!Sample_title = cy129_CD45negCD90neg_S53
!Sample_geo_accession = GSM3203942
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452505
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203943
!Sample_title = cy128_CD45pos_S181
!Sample_geo_accession = GSM3203943
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452504
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3203944
!Sample_title = cy128_CD45pos_S178
!Sample_geo_accession = GSM3203944
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452503
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203945
!Sample_title = cy129_CD45negCD90neg_S14
!Sample_geo_accession = GSM3203945
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452502
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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!Sample_title = cy121.1_CD45pos_S368
!Sample_geo_accession = GSM3203946
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203947
!Sample_title = cy121.1_CD45pos_S367
!Sample_geo_accession = GSM3203947
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy129_CD45negCD90neg_S23
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203953
!Sample_title = cy121.1_CD45pos_S383
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203954
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452567
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203955
!Sample_title = cy129_CD45negCD90neg_S9
!Sample_geo_accession = GSM3203955
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452566
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203956
!Sample_title = cy128_CD45neg_S243
!Sample_geo_accession = GSM3203956
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452565
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203957
!Sample_title = cy129_CD45negCD90neg_S71
!Sample_geo_accession = GSM3203957
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452564
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203958
!Sample_title = cy121.1_CD45pos_S316
!Sample_geo_accession = GSM3203958
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452563
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203959
!Sample_title = cy128_CD45pos_S171
!Sample_geo_accession = GSM3203959
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452562
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203960
!Sample_title = cy121.1_CD45pos_S375
!Sample_geo_accession = GSM3203960
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
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!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452561
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203961
!Sample_title = cy129_CD45negCD90neg_S76
!Sample_geo_accession = GSM3203961
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452560
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203962
!Sample_title = cy121.1_CD45pos_S347
!Sample_geo_accession = GSM3203962
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Macrophage
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452559
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203963
!Sample_title = cy128_CD45pos_S117
!Sample_geo_accession = GSM3203963
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452558
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3203964
!Sample_title = cy128_CD45pos_S114
!Sample_geo_accession = GSM3203964
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452557
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^SAMPLE = GSM3203965
!Sample_title = cy128_CD45pos_S176
!Sample_geo_accession = GSM3203965
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203966
!Sample_title = cy128_CD45pos_S164
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_title = cy121.1_CD45pos_S344
!Sample_geo_accession = GSM3203967
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203968
!Sample_title = cy128_CD45neg_S253
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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^SAMPLE = GSM3203969
!Sample_title = cy121.1_CD45pos_S313
!Sample_geo_accession = GSM3203969
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452452
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3203970
!Sample_title = cy128_CD45pos_S163
!Sample_geo_accession = GSM3203970
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203971
!Sample_title = cy128_CD45pos_S146
!Sample_geo_accession = GSM3203971
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452449
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!Sample_title = cy121.1_CD45pos_S322
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy129_CD45negCD90neg_S39
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_title = cy121.1_CD45pos_S378
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203978
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203979
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3203980
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!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452441
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203981
!Sample_title = cy121.1_CD45pos_S305
!Sample_geo_accession = GSM3203981
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452440
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203982
!Sample_title = cy129_CD45negCD90neg_S47
!Sample_geo_accession = GSM3203982
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452439
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203983
!Sample_title = cy128_CD45neg_S236
!Sample_geo_accession = GSM3203983
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452438
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203984
!Sample_title = cy128_CD45neg_S221
!Sample_geo_accession = GSM3203984
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452437
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203985
!Sample_title = cy129_CD45negCD90neg_S73
!Sample_geo_accession = GSM3203985
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452436
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203986
!Sample_title = cy128_CD45neg_S220
!Sample_geo_accession = GSM3203986
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Mal
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452435
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203987
!Sample_title = cy128_CD45pos_S169
!Sample_geo_accession = GSM3203987
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452434
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203988
!Sample_title = cy128_CD45pos_S120
!Sample_geo_accession = GSM3203988
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452433
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3203989
!Sample_title = cy128_CD45pos_S157
!Sample_geo_accession = GSM3203989
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel128
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452432
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^SAMPLE = GSM3203990
!Sample_title = cy121.1_CD45pos_S331
!Sample_geo_accession = GSM3203990
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_title = cy121.1_CD45pos_S329
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_title = cy129_CD45negCD90neg_S19
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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^SAMPLE = GSM3203994
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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^SAMPLE = GSM3203996
!Sample_title = cy121.1_CD45pos_S353
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_submission_date = Jun 18 2018
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452545
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204007
!Sample_title = cy121.1_CD45pos_S328
!Sample_geo_accession = GSM3204007
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel121.1
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452544
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204008
!Sample_title = cy129PA_CD45pos_S111
!Sample_geo_accession = GSM3204008
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
!Sample_characteristics_ch1 = treatment-group: treatment.naive
!Sample_characteristics_ch1 = cohort: New
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452543
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204009
!Sample_title = cy129PA_CD45pos_S188
!Sample_geo_accession = GSM3204009
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = tumor-of-origin: Mel129pa
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452542
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204010
!Sample_title = cy129PA_CD45pos_S140
!Sample_geo_accession = GSM3204010
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452541
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204011
!Sample_title = cy129PA_CD45pos_S114
!Sample_geo_accession = GSM3204011
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452540
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204012
!Sample_title = cy129PA_CD45pos_S148
!Sample_geo_accession = GSM3204012
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452539
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204013
!Sample_title = cy129PA_CD45pos_S145
!Sample_geo_accession = GSM3204013
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cohort: New
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452538
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204014
!Sample_title = monika_A12_S100_comb_BCD8_3
!Sample_geo_accession = GSM3204014
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452537
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204015
!Sample_title = CY75_1_CD45_CD8_3__S110_comb_BCD8
!Sample_geo_accession = GSM3204015
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452536
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204016
!Sample_title = monika_E12_S137_comb_BCD8_3
!Sample_geo_accession = GSM3204016
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452535
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204017
!Sample_title = CY75_1_CD45_CD8_7__S213_comb_BCD8
!Sample_geo_accession = GSM3204017
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452534
!Sample_supplementary_file_1 = NONE
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!Sample_title = CY75_1_CD45_CD8_3__S170_comb_BCD8
!Sample_geo_accession = GSM3204018
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452533
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204019
!Sample_title = CY75_1_CD45_CD8_8__S384_comb_BCD8
!Sample_geo_accession = GSM3204019
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_geo_accession = GSM3204020
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204021
!Sample_title = CY75_1_CD45_CD8_3__S162_comb_BCD8
!Sample_geo_accession = GSM3204021
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452600
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3204022
!Sample_title = CY75_1_CD45_CD8_7__S256_comb_BCD8
!Sample_geo_accession = GSM3204022
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09452599
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3204023
!Sample_title = CY75_1_CD45_CD8_7__S194_comb_BCD8
!Sample_geo_accession = GSM3204023
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_geo_accession = GSM3204024
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450959
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204033
!Sample_title = CY75_1_CD45_CD8_3__S159_comb_BCD8
!Sample_geo_accession = GSM3204033
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450958
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204034
!Sample_title = CY75_1_CD45_CD8_8__S316_comb_BCD8
!Sample_geo_accession = GSM3204034
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450957
!Sample_supplementary_file_1 = NONE
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!Sample_title = CY75_1_CD45_CD8_3__S124_comb_BCD8
!Sample_geo_accession = GSM3204035
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450956
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!Sample_geo_accession = GSM3204036
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3204040
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450951
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3204041
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!Sample_geo_accession = GSM3204041
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3204042
!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450933
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204059
!Sample_title = CY75_1_CD45_CD8_3__S116_comb_BCD8
!Sample_geo_accession = GSM3204059
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450932
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204060
!Sample_title = CY75_1_CD45_CD8_3__S161_comb_BCD8
!Sample_geo_accession = GSM3204060
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450931
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204061
!Sample_title = monika_F5_S148_comb_BCD8_3
!Sample_geo_accession = GSM3204061
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450707
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204062
!Sample_title = monika_B2_S111_comb_BCD8_3
!Sample_geo_accession = GSM3204062
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450706
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204063
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!Sample_geo_accession = GSM3204063
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450705
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204064
!Sample_title = CY75_1_CD45_CD8_3__S189_comb_BCD8
!Sample_geo_accession = GSM3204064
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450704
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!Sample_data_row_count = 0
^SAMPLE = GSM3204065
!Sample_title = CY75_1_CD45_CD8_7__S283_comb_BCD8
!Sample_geo_accession = GSM3204065
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450703
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^SAMPLE = GSM3204066
!Sample_title = CY75_1_CD45_CD8_8__S347_comb_BCD8
!Sample_geo_accession = GSM3204066
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450702
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204067
!Sample_title = CY75_1_CD45_CD8_3__S175_comb_BCD8
!Sample_geo_accession = GSM3204067
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450701
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204068
!Sample_title = CY75_1_CD45_CD8_8__S356_comb_BCD8
!Sample_geo_accession = GSM3204068
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450700
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204069
!Sample_title = CY75_1_CD45_CD8_3__S190_comb_BCD8
!Sample_geo_accession = GSM3204069
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450699
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204070
!Sample_title = CY75_1_CD45_CD8_7__S223_comb_BCD8
!Sample_geo_accession = GSM3204070
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450698
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204071
!Sample_title = CY75_1_CD45_CD8_8__S322_comb_BCD8
!Sample_geo_accession = GSM3204071
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3204072
!Sample_title = CY75_1_CD45_CD8_8__S292_comb_BCD8
!Sample_geo_accession = GSM3204072
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450696
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204073
!Sample_title = CY75_1_CD45_CD8_8__S374_comb_BCD8
!Sample_geo_accession = GSM3204073
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450695
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^SAMPLE = GSM3204074
!Sample_title = CY75_1_CD45_CD8_8__S333_comb_BCD8
!Sample_geo_accession = GSM3204074
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450694
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204075
!Sample_title = CY75_1_CD45_CD8_7__S285_comb_BCD8
!Sample_geo_accession = GSM3204075
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450693
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204076
!Sample_title = CY75_1_CD45_CD8_8__S337_comb_BCD8
!Sample_geo_accession = GSM3204076
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450692
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204077
!Sample_title = CY75_1_CD45_CD8_8__S360_comb_BCD8
!Sample_geo_accession = GSM3204077
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450691
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204078
!Sample_title = CY75_1_CD45_CD8_7__S198_comb_BCD8
!Sample_geo_accession = GSM3204078
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450690
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204079
!Sample_title = CY75_1_CD45_CD8_3__S174_comb_BCD8
!Sample_geo_accession = GSM3204079
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450689
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204080
!Sample_title = monika_E10_S135_comb_BCD8_3
!Sample_geo_accession = GSM3204080
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450688
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204081
!Sample_title = CY75_1_CD45_CD8_8__S370_comb_BCD8
!Sample_geo_accession = GSM3204081
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450687
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3204082
!Sample_title = CY75_1_CD45_CD8_7__S196_comb_BCD8
!Sample_geo_accession = GSM3204082
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450686
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3204083
!Sample_title = CY75_1_CD45_CD8_7__S199_comb_BCD8
!Sample_geo_accession = GSM3204083
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
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!Sample_characteristics_ch1 = cell type: T.CD4
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450685
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204084
!Sample_title = CY75_1_CD45_CD8_8__S320_comb_BCD8
!Sample_geo_accession = GSM3204084
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3204111
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450635
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204119
!Sample_title = monika_F4_S147_comb_BCD8_3
!Sample_geo_accession = GSM3204119
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450709
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!Sample_title = CY75_1_CD45_CD8_7__S282_comb_BCD8
!Sample_geo_accession = GSM3204120
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_geo_accession = GSM3204121
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3204126
!Sample_title = monika_C6_S124_comb_BCD8_3
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450613
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204127
!Sample_title = monika_E8_S142_comb_BCD8_3
!Sample_geo_accession = GSM3204127
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_geo_accession = GSM3204145
!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
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!Sample_geo_accession = GSM3204162
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09450532
!Sample_supplementary_file_1 = NONE
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!Sample_title = CY75_1_CD45_CD8_3__S150_comb_BCD8
!Sample_geo_accession = GSM3204188
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3204189
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451320
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204214
!Sample_title = CY75_1_CD45_CD8_7__S211_comb_BCD8
!Sample_geo_accession = GSM3204214
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451319
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204215
!Sample_title = CY75_1_CD45_CD8_8__S339_comb_BCD8
!Sample_geo_accession = GSM3204215
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
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!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451318
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204216
!Sample_title = CY75_1_CD45_CD8_7__S200_comb_BCD8
!Sample_geo_accession = GSM3204216
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451317
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204217
!Sample_title = CY75_1_CD45_CD8_3__S173_comb_BCD8
!Sample_geo_accession = GSM3204217
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451316
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204218
!Sample_title = CY75_1_CD45_CD8_3__S156_comb_BCD8
!Sample_geo_accession = GSM3204218
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451314
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204219
!Sample_title = CY75_1_CD45_CD8_8__S376_comb_BCD8
!Sample_geo_accession = GSM3204219
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451313
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204220
!Sample_title = CY75_1_CD45_CD8_8__S353_comb_BCD8
!Sample_geo_accession = GSM3204220
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: Undetermined
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451312
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3204221
!Sample_title = CY75_1_CD45_CD8_8__S291_comb_BCD8
!Sample_geo_accession = GSM3204221
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451311
!Sample_supplementary_file_1 = NONE
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451302
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204231
!Sample_title = CY75_1_CD45_CD8_3__S114_comb_BCD8
!Sample_geo_accession = GSM3204231
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451301
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204232
!Sample_title = CY75_1_CD45_CD8_8__S371_comb_BCD8
!Sample_geo_accession = GSM3204232
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451300
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204233
!Sample_title = CY75_1_CD45_CD8_8__S357_comb_BCD8
!Sample_geo_accession = GSM3204233
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451299
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204234
!Sample_title = CY75_1_CD45_CD8_8__S300_comb_BCD8
!Sample_geo_accession = GSM3204234
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451298
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204235
!Sample_title = CY75_1_CD45_CD8_3__S135_comb_BCD8
!Sample_geo_accession = GSM3204235
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204236
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!Sample_geo_accession = GSM3204236
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451296
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204237
!Sample_title = CY75_1_CD45_CD8_3__S132_comb_BCD8
!Sample_geo_accession = GSM3204237
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451295
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3204238
!Sample_title = CY75_1_CD45_CD8_3__S160_comb_BCD8
!Sample_geo_accession = GSM3204238
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451294
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204239
!Sample_title = CY75_1_CD45_CD8_7__S260_comb_BCD8
!Sample_geo_accession = GSM3204239
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_geo_accession = GSM3204240
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
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!Sample_status = Public on Nov 01 2018
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!Sample_last_update_date = Nov 01 2018
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!Sample_platform_id = GPL18573
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
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!Sample_platform_id = GPL18573
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451484
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204257
!Sample_title = CY75_1_CD45_CD8_8__S364_comb_BCD8
!Sample_geo_accession = GSM3204257
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451483
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204258
!Sample_title = CY75_1_CD45_CD8_3__S171_comb_BCD8
!Sample_geo_accession = GSM3204258
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451482
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204259
!Sample_title = CY75_1_CD45_CD8_7__S247_comb_BCD8
!Sample_geo_accession = GSM3204259
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451481
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204260
!Sample_title = CY75_1_CD45_CD8_3__S127_comb_BCD8
!Sample_geo_accession = GSM3204260
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451480
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204261
!Sample_title = CY75_1_CD45_CD8_7__S236_comb_BCD8
!Sample_geo_accession = GSM3204261
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451479
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204262
!Sample_title = CY75_1_CD45_CD8_8__S335_comb_BCD8
!Sample_geo_accession = GSM3204262
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451478
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3204263
!Sample_title = CY75_1_CD45_CD8_7__S229_comb_BCD8
!Sample_geo_accession = GSM3204263
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
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!Sample_characteristics_ch1 = cell type: T.cell
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451544
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3204264
!Sample_title = CY75_1_CD45_CD8_7__S227_comb_BCD8
!Sample_geo_accession = GSM3204264
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_characteristics_ch1 = tumor-of-origin: Mel75
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451534
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204274
!Sample_title = CY75_1_CD45_CD8_7__S245_comb_BCD8
!Sample_geo_accession = GSM3204274
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451533
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
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^SAMPLE = GSM3204275
!Sample_title = CY75_1_CD45_CD8_8__S359_comb_BCD8
!Sample_geo_accession = GSM3204275
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451532
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204276
!Sample_title = CY75_1_CD45_CD8_8__S363_comb_BCD8
!Sample_geo_accession = GSM3204276
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451531
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204277
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!Sample_geo_accession = GSM3204277
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451530
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204278
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!Sample_geo_accession = GSM3204278
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204279
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!Sample_geo_accession = GSM3204279
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451528
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^SAMPLE = GSM3204280
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!Sample_geo_accession = GSM3204280
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_contact_address = 415 Main Street
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!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451527
!Sample_supplementary_file_1 = NONE
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!Sample_data_row_count = 0
^SAMPLE = GSM3204281
!Sample_title = CY75_1_CD45_CD8_8__S372_comb_BCD8
!Sample_geo_accession = GSM3204281
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
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!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
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!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451526
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204282
!Sample_title = CY75_1_CD45_CD8_3__S183_comb_BCD8
!Sample_geo_accession = GSM3204282
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
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!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
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!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451525
!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204283
!Sample_title = CY75_1_CD45_CD8_8__S361_comb_BCD8
!Sample_geo_accession = GSM3204283
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_characteristics_ch1 = cohort: Tirosh
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_supplementary_file_1 = NONE
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^SAMPLE = GSM3204284
!Sample_title = CY75_1_CD45_CD8_8__S342_comb_BCD8
!Sample_geo_accession = GSM3204284
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3204285
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!Sample_geo_accession = GSM3204285
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_contact_laboratory = Aviv Regev
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^SAMPLE = GSM3204287
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
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!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
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!Sample_platform_id = GPL18573
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3204288
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!Sample_status = Public on Nov 01 2018
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!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
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!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
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!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
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!Sample_instrument_model = Illumina NextSeq 500
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!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451455
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^SAMPLE = GSM3204289
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!Sample_geo_accession = GSM3204289
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
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!Sample_platform_id = GPL18573
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!Sample_contact_zip/postal_code = 02142
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!Sample_instrument_model = Illumina NextSeq 500
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^SAMPLE = GSM3204290
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!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
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!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
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!Sample_platform_id = GPL18573
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!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451444
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0
^SAMPLE = GSM3204300
!Sample_title = CY75_1_CD45_CD8_8__S351_comb_BCD8
!Sample_geo_accession = GSM3204300
!Sample_status = Public on Nov 01 2018
!Sample_submission_date = Jun 18 2018
!Sample_last_update_date = Nov 01 2018
!Sample_type = SRA
!Sample_channel_count = 1
!Sample_source_name_ch1 = melanoma tumor
!Sample_organism_ch1 = Homo sapiens
!Sample_taxid_ch1 = 9606
!Sample_characteristics_ch1 = tumor-of-origin: Mel75
!Sample_characteristics_ch1 = treatment-group: post.treatment
!Sample_characteristics_ch1 = cohort: Tirosh
!Sample_characteristics_ch1 = cell type: T.CD8
!Sample_molecule_ch1 = total RNA
!Sample_extract_protocol_ch1 = Dissociated individual cells from fresh tumor resections. Isolated immune and non-immune cells by FACS based on CD45 staining.
!Sample_extract_protocol_ch1 = Full-length RNAseq (SMART-Seq2) libraries sequenced with 38bp paired-end reads on an Illumina NextSeq 500.
!Sample_description = Full-length RNAseq (SMART-Seq2) reads.
!Sample_description = processed data file: counts.csv
!Sample_description = processed data file: tpm.csv
!Sample_description = processed data file: cell.annotations.csv
!Sample_data_processing = Full-length RNAseq (SMART-Seq2).
!Sample_data_processing = Tophat
!Sample_data_processing = Bowtie mapping to UCSC hg19 human transcriptome.
!Sample_data_processing = RSEM v1.2.8
!Sample_data_processing = Genome_build: hg19 (GRCh37)
!Sample_data_processing = Supplementary_files_format_and_content: cell.annotations.csv: Comma-separated cell sample annotation table; For each cell (row): cell name, sample type, cell type, treatment group, cohort, number of genes, number of reads.
!Sample_data_processing = Supplementary_files_format_and_content: counts.csv: Comma-separated counts table; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in counts as calculated using RSEM.
!Sample_data_processing = Supplementary_files_format_and_content: tpm.csv: Comma-separated log-transformed transcripts per million (TPM) table; Values are provided as log2[(TPM/10) +1]; Full-length RNAseq (SMART-Seq2); The expression levels for each gene (rows) in each single cell (column) in transcripts per million (TPM) as calculated using RSEM.
!Sample_platform_id = GPL18573
!Sample_contact_name = Orr,,Ashenberg
!Sample_contact_laboratory = Aviv Regev
!Sample_contact_department = Klarman Cell Observatory
!Sample_contact_institute = Broad Institute
!Sample_contact_address = 415 Main Street
!Sample_contact_city = Cambridge
!Sample_contact_state = MA
!Sample_contact_zip/postal_code = 02142
!Sample_contact_country = USA
!Sample_instrument_model = Illumina NextSeq 500
!Sample_library_selection = cDNA
!Sample_library_source = transcriptomic
!Sample_library_strategy = RNA-Seq
!Sample_relation = BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN09451443
!Sample_supplementary_file_1 = NONE
!Sample_series_id = GSE115978
!Sample_data_row_count = 0